Locus 3247

Sequence ID 3R_DroMel_CAF1
Location 8,660,709 – 8,660,807
Length 98
Max. P 0.983396
window5249

overview

Window 9

Location 8,660,709 – 8,660,807
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 63.37
Mean single sequence MFE -25.03
Consensus MFE -12.55
Energy contribution -15.33
Covariance contribution 2.78
Combinations/Pair 1.14
Mean z-score -2.01
Structure conservation index 0.50
SVM decision value 1.94
SVM RNA-class probability 0.983396
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8660709 98 + 27905053
UUUUAUGAAAUGAGGGGCGGAUAACUGUGAAAAGGGGAUCGCUGGGAAAUGGGGGGGUGGGAACAAAAAGCCGAGCCGUUUUGCAACUGAGAAACAAA
..........(.((.(((((.(..((......))..).)))))(.(((((((...(((...........)))...))))))).)..)).)........ ( -17.50)
>DroPse_CAF1 99297 77 + 1
CUUUAUGAUCCGACGGGAUCAUAU--------------------GGA-AGGGGUGAGUGGGGAGGGGCCGGCUGGUUCCUUUGCCACACAGAAACAAA
((.((((((((....)))))))).--------------------)).-.....((.(((((((((((((....))))))))).)))).))........ ( -29.20)
>DroPer_CAF1 95314 77 + 1
CUUUAUGAUCCGACGGGAUCAUAU--------------------GGA-AGGGGUGAGUGGGGAGGGGCCGGCUGGUUCCUUUGCAACACAGAAACAAA
((.((((((((....)))))))).--------------------)).-....(((..((.(((((((((....))))))))).)).)))......... ( -28.40)
>consensus
CUUUAUGAUCCGACGGGAUCAUAU____________________GGA_AGGGGUGAGUGGGGAGGGGCCGGCUGGUUCCUUUGCAACACAGAAACAAA
...((((((((....)))))))).............................(((...(.(((((((((....))))))))).)..)))......... (-12.55 = -15.33 +   2.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:36 2006