Locus 3246

Sequence ID 3R_DroMel_CAF1
Location 8,658,268 – 8,658,374
Length 106
Max. P 0.725302
window5248

overview

Window 8

Location 8,658,268 – 8,658,374
Length 106
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 95.09
Mean single sequence MFE -29.80
Consensus MFE -25.48
Energy contribution -26.15
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.86
SVM decision value 0.41
SVM RNA-class probability 0.725302
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8658268 106 - 27905053
U-UAUUAUUCGCUCAAUAUUUCAUGACAGCUCCGGCAAAUUGCUCAUACGUCAUGUGGGC---GGCAUGAAUAAGGUAACGCGGUGCCUGCAAUUUGCCGUUAAUAAGUU
(-(((((...(((((........)))..))..(((((((((((((((.((((.....)))---)..))))...(((((......)))))))))))))))).))))))... ( -31.40)
>DroSec_CAF1 85074 106 - 1
U-UAUUAUUCGCUCAAUAUUUCAUGACAGCUCCGGCAAAUUGCUCAUACGUCAUGUGGGC---GGCAUGAAUAAGGUAACGCGGUGCCUGCAAUUUGCCGUUAAUAAGUU
(-(((((...(((((........)))..))..(((((((((((((((.((((.....)))---)..))))...(((((......)))))))))))))))).))))))... ( -31.40)
>DroSim_CAF1 101400 106 - 1
U-UAUUAUUCGCUCAAUAUUUCAUGACAGCUCCGGCAAAUUGCUCAUACGUCAUGUGGGC---GGCAUGAAUAAGGUAGCGCGGUGCCUGCAAUUUGCCGUUAAUAAGUU
(-(((((...(((((........)))..))..(((((((((((((((.((((.....)))---)..))))...(((((......)))))))))))))))).))))))... ( -31.30)
>DroEre_CAF1 98462 106 - 1
U-UAUUAUUCGCUCAAUAUUUCAUGACAGCCCCGGCAAAUUGCUCAUACGUCAUGUGGGC---GGCAUGAAUAAGGUAACGCGGUGCCUGCAAUUUGCCGUUAAUAAGUU
(-(((((...(((((........)))..))..(((((((((((((((.((((.....)))---)..))))...(((((......)))))))))))))))).))))))... ( -31.00)
>DroYak_CAF1 90852 106 - 1
U-UAUUAUUCUCUCAAUUUUUCAUGACAGCUCCGGCAAAUUGCUCAUACGUCAUGUGGGC---GGCAUGAAUAAGGUAACGCGGUGCCUGCAAUUUGCCGUUAAUAAGUU
(-(((((..((.(((........))).))...(((((((((((((((.((((.....)))---)..))))...(((((......)))))))))))))))).))))))... ( -30.70)
>DroAna_CAF1 79725 108 - 1
UGUAUUAUUCGCUCAAUAUUUCAUGACAGCUCCGGAAAAUUGCUCAUACGUCAUGUGAACGUUGGCAUGAAUAAGGUA-UUCGGUGC-AGCAAUUUGCCGUUAAUAAGUU
..(((((...(((((........)))..))..(((.(((((((((((..((((((....)).)))).((((((...))-))))))).-)))))))).))).))))).... ( -23.00)
>consensus
U_UAUUAUUCGCUCAAUAUUUCAUGACAGCUCCGGCAAAUUGCUCAUACGUCAUGUGGGC___GGCAUGAAUAAGGUAACGCGGUGCCUGCAAUUUGCCGUUAAUAAGUU
..(((((...(((((........)))..))..(((((((((((.......((((((........))))))...(((((......)))))))))))))))).))))).... (-25.48 = -26.15 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:35 2006