Locus 3244

Sequence ID 3R_DroMel_CAF1
Location 8,657,586 – 8,657,702
Length 116
Max. P 0.884323
window5244

overview

Window 4

Location 8,657,586 – 8,657,702
Length 116
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 92.12
Mean single sequence MFE -28.82
Consensus MFE -25.90
Energy contribution -25.42
Covariance contribution -0.48
Combinations/Pair 1.13
Mean z-score -1.42
Structure conservation index 0.90
SVM decision value 0.93
SVM RNA-class probability 0.884323
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8657586 116 + 27905053
UGCCAAAGUUCAAUGUUAAUUUUGGACAUUUACCUGUGCUAAUAUUGGUCACAUGCAGACAUACAGCAGUAGGCAAAAAGCUAGUAGAUAUGUGGGUGCUGGUAAACUAAUAAAAC--
(((((..((((((........))))))...((((..(.....(((((((....(((..((........))..)))....))))))).....)..)))).)))))............-- ( -26.20)
>DroSec_CAF1 84408 118 + 1
UGCCAAAGUUCAAUGUUAAUUUUGGACAUUUACCUGUGCUAAUAUUGGCCACAUGCAGACAUACAGCAGUAGGCAAAAAUCUAGUGGAUAUGUGGGUGCUGGUAAGCCAAACACAUUC
((((((((((.......)))))))).))((((((.(..((.((((...((((.(((.........))).((((......))))))))..)))).))..).))))))............ ( -28.00)
>DroSim_CAF1 100732 118 + 1
UGCCAAAGUUCAAUGUUAAUUUUGGACAUUUACCUGUGCUAAUAUUGGCCACAUGCAGACAUACAGCAGUAGGCAAAAAGCUAGUGGAUAUGUGGGUGCUGGUAAACUAAGCACAUUC
(((....((((((........)))))).((((((.(..((.((((...((((.(((.........)))...(((.....))).))))..)))).))..).))))))....)))..... ( -31.40)
>DroEre_CAF1 97627 118 + 1
UGCCAAAGUUCAAUGUUAAUUUUGGACAUUUACCUGUGCUAAUAUUGGCCACAUGCAGACAUACAGCAGUAGGCAAAAAGCUAGUAAAUAGAUGGGUGCAGGUAGACUAAACACACCU
((((((((((.......)))))))).))((((((((..((..(((((((....(((..((........))..)))....)))))))........))..))))))))............ ( -30.80)
>DroYak_CAF1 90015 118 + 1
UGCCAAAGUUCAAUGUUAAUUUUGGACAUUUACCUGUGCUAAUAUUGGCCACAUGCAGACAUACAGUAGUAGGCAAAAAGCUAGUAAACAGAUGGGUGCUGGUAAACUAAACACACCU
(((((..((((((........))))))...(((((((.((..(((((((....(((..((........))..)))....)))))))...))))))))).))))).............. ( -27.70)
>consensus
UGCCAAAGUUCAAUGUUAAUUUUGGACAUUUACCUGUGCUAAUAUUGGCCACAUGCAGACAUACAGCAGUAGGCAAAAAGCUAGUAGAUAUGUGGGUGCUGGUAAACUAAACACACCC
((((((((((.......)))))))).))((((((.(..((..(((((((....(((..((........))..)))....)))))))........))..).))))))............ (-25.90 = -25.42 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:31 2006