Locus 3243

Sequence ID 3R_DroMel_CAF1
Location 8,657,418 – 8,657,508
Length 90
Max. P 0.994270
window5243

overview

Window 3

Location 8,657,418 – 8,657,508
Length 90
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 87.79
Mean single sequence MFE -35.65
Consensus MFE -30.81
Energy contribution -30.84
Covariance contribution 0.03
Combinations/Pair 1.12
Mean z-score -3.59
Structure conservation index 0.86
SVM decision value 2.46
SVM RNA-class probability 0.994270
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8657418 90 - 27905053
GGGCCCUGCAUUGGGCUUAGUGUUAAGCUUAAUGCCGGGGCCAGACAUC-------CGACU-CCCGAUAACAGGAUGUCCAUACAACUACGGCUACAA--
.((((((((((((((((((....))))))))))).))))))).((((((-------(....-..........)))))))...................-- ( -37.54)
>DroSec_CAF1 84240 90 - 1
GGGCUCUGCAUUGGGCUUAGUGUUAAGCUUAAUGCCGGGGCCAGACAUC-------CGACU-CCCGAUAACAGGAUGUCCAUACAACUACGGCUACAA--
.((((((((((((((((((....))))))))))).))))))).((((((-------(....-..........)))))))...................-- ( -34.54)
>DroSim_CAF1 100564 90 - 1
GGGCCCUGCAUUGGGCUUAGUGUUAAGCUUAAUGCCGGGGCCAGACAUC-------CGACU-CCCGAUAACAGGAUGUCCAUACAACUACGGCUACAA--
.((((((((((((((((((....))))))))))).))))))).((((((-------(....-..........)))))))...................-- ( -37.54)
>DroEre_CAF1 97459 90 - 1
GGGCCCUGCAUUGGGCUUAGUGUUAAGCUUAAUGCCGGGGCCAGACAUC-------CGACU-CCCGAUAACAGGAUGUCCAUACAACUACGGCAACGA--
.((((((((((((((((((....))))))))))).))))))).((((((-------(....-..........)))))))..........((....)).-- ( -40.84)
>DroYak_CAF1 89840 92 - 1
GGGCCCUGCAUUGGGCUUAGUGUUAAGCUUAAUGCCCGGGCCAGACAUC-------CGACU-CCCGAUAACAGGAUGUCCAUACAACUACGGCUACAACU
.(((((.((((((((((((....))))))))))))..))))).((((((-------(....-..........)))))))..................... ( -35.64)
>DroPer_CAF1 91779 88 - 1
GGGGUCUGCAUUGGGCUUAGUGUUAAGCCUAAUGCCGGGUCCAGACAUCAGACAUACGACUCCCCGAUAGCACAAAGACG----A------GCAACAA--
((((...((((((((((((....))))))))))))((.(((.........)))...))...))))....((.(......)----.------)).....-- ( -27.80)
>consensus
GGGCCCUGCAUUGGGCUUAGUGUUAAGCUUAAUGCCGGGGCCAGACAUC_______CGACU_CCCGAUAACAGGAUGUCCAUACAACUACGGCUACAA__
.((((((((((((((((((....))))))))))).))))))).((((((.......((......)).......))))))..................... (-30.81 = -30.84 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:30 2006