Locus 3242

Sequence ID 3R_DroMel_CAF1
Location 8,656,078 – 8,656,173
Length 95
Max. P 0.874348
window5242

overview

Window 2

Location 8,656,078 – 8,656,173
Length 95
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 90.62
Mean single sequence MFE -30.28
Consensus MFE -24.88
Energy contribution -25.48
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.70
Structure conservation index 0.82
SVM decision value 0.89
SVM RNA-class probability 0.874348
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8656078 95 - 27905053
GUUGUCAUCGG----------UGCCACAGUGCCAGCUCAUAAUUUAAUAUUGAUUGGGUUAACAGCUGAGCAUUCGUUUGGGAAGGGGACUCCCACACGGAAUCC
.........((----------..((..((((((((((..(((((((((....)))))))))..))))).))))).((.(((((.(....)))))).))))...)) ( -31.30)
>DroSec_CAF1 82906 95 - 1
GUUGUCAUCGG----------UGCCACAGUGCCAGCUCAUAAUUUAAUAUUGAUUGGGUUAACAGCUGAGCAUUCGUUUGGGAAUGGGACUCCCACACGCAAUCC
...........----------(((...((((((((((..(((((((((....)))))))))..))))).))))).((.(((((.......))))).))))).... ( -26.50)
>DroSim_CAF1 99187 95 - 1
GUUGUCAUCGG----------UGCCACAGUGCCAGCUCAUAAUUUAAUAUUGAUUGGGUUAACAGCUGAGCAUUCGUUUGGGAAGGGGACUCCCACACGCAAUCC
...........----------(((...((((((((((..(((((((((....)))))))))..))))).))))).((.(((((.(....)))))).))))).... ( -30.00)
>DroEre_CAF1 96185 99 - 1
GUUGUCAUCGGUAG------UUGCUAUAGUGCCUGCUCAUAAUUUAAUAUUGAUUGGGUUAACAGCUGAGCAUUCGUUUGGGAAGGGGACUCCCACACGGAAUCC
.........((((.------(......).))))(((((((((((((((....))))))))).....))))))(((((.(((((.(....)))))).))))).... ( -29.50)
>DroYak_CAF1 88466 105 - 1
GUUGUCACCGCUAUGCCAUAGUGCCAUAGUGCCAGCUCAUAAUUUAAUAUUGAUUGGGUUAACAGCUCAGCAUUCGUUUGGGAAGGGGACUCCCAAACGGUAUCC
((((....(((((((.(.....).)))))))..((((..(((((((((....)))))))))..))))))))..((((((((((.(....)))))))))))..... ( -34.10)
>consensus
GUUGUCAUCGG__________UGCCACAGUGCCAGCUCAUAAUUUAAUAUUGAUUGGGUUAACAGCUGAGCAUUCGUUUGGGAAGGGGACUCCCACACGGAAUCC
...........................((((((((((..(((((((((....)))))))))..))))).)))))(((.(((((.(....)))))).)))...... (-24.88 = -25.48 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:29 2006