Locus 3240

Sequence ID 3R_DroMel_CAF1
Location 8,653,115 – 8,653,207
Length 92
Max. P 0.772514
window5240

overview

Window 0

Location 8,653,115 – 8,653,207
Length 92
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 79.83
Mean single sequence MFE -11.12
Consensus MFE -6.91
Energy contribution -6.77
Covariance contribution -0.14
Combinations/Pair 1.09
Mean z-score -1.85
Structure conservation index 0.62
SVM decision value 0.53
SVM RNA-class probability 0.772514
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8653115 92 - 27905053
CA----CCAAACAAUCAACGCAAAUUUCACGGCAA-AACGUAAAAAUGCGUAAAUAAAUUUUAUGCACCCAAACACCCCCA----AAAAUGU--AUUUUCAUU
..----.............(((..(((.(((....-..))).))).((((((((.....))))))))..............----....)))--......... ( -10.60)
>DroVir_CAF1 100455 89 - 1
AA----C--AACAAUCAACGCACAUUUCAUGACAA-AACGUAAAACUGCGUAAAUACAUUUGACGUAACCGU-UGG-CCGAG---AAGA-GUUGCCCUCUAU-
..----(--(((.....(((((..(((.(((....-..))).))).)))))...(((.......)))...))-)).-.....---.(((-(.....))))..- ( -12.10)
>DroSim_CAF1 96267 91 - 1
CA----CCAAACAAUCAACGCAAAUUUCACGACAA-AACGUAAAAAUGCGUAAAUAAAUUUUAUGCACCCAAACACCGCCA----AAAA-GU--CUUUUCAUU
..----.............((...(((.(((....-..))).))).((((((((.....))))))))..........))..----....-..--......... ( -10.10)
>DroEre_CAF1 93130 92 - 1
CA----CCAAACAAUCAACGCAAAUUUCACGACAA-AACGUAAAAAUGCGUAAAUAAAUUUUAUGCACCCAAACACCCCAA----AAAAUGU--CUGUUCGUU
..----...((((..((.......(((.(((....-..))).))).((((((((.....))))))))..............----....)).--.)))).... ( -10.40)
>DroWil_CAF1 103163 94 - 1
CAGCGACCAAAUAAUCAACGCAAAUUUCACGACAAAAACGUAAAAAUGCGUAAAUAAAUUUUAUGAA----GACUCCCCAAGUCCAAAAUGU-----UUCGUU
.(((((...........(((((..(((.(((.......))))))..)))))................----((((.....))))........-----.))))) ( -12.50)
>DroYak_CAF1 85428 91 - 1
CA----CUAAACAAUCAACGCAAAUUUCACGACAA-AACGUAAAAAUGCGUAAAUAAAUUUUAUGCACCCAAACUCCCCAA-----AAAUAU--CUUUUGAUU
..----......((((((......(((.(((....-..))).))).((((((((.....))))))))..............-----......--...)))))) ( -11.00)
>consensus
CA____CCAAACAAUCAACGCAAAUUUCACGACAA_AACGUAAAAAUGCGUAAAUAAAUUUUAUGCACCCAAACACCCCAA____AAAAUGU__CUUUUCAUU
.................(((((..(((.(((.......))))))..))))).................................................... ( -6.91 =  -6.77 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:27 2006