| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,245,165 – 1,245,261 |
| Length | 96 |
| Max. P | 0.879263 |
| Location | 1,245,165 – 1,245,261 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 74.13 |
| Mean single sequence MFE | -28.92 |
| Consensus MFE | -10.94 |
| Energy contribution | -12.92 |
| Covariance contribution | 1.98 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.879263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1245165 96 - 27905053 AAUGGUAAUAACAGGACAGGUGUGUGAGUGGAA---AGAUCUAGAACCCUGCCAUUUCCCU-GGCGGCCUUGGGGCCUUUGUCCUGUUAAUUGCCUCUGA ...(((((((((((((((((...((.((.((((---(....(((....)))...)))))))-.))((((....))))))))))))))).))))))..... ( -38.90) >DroSec_CAF1 18989 80 - 1 AAGGGUAAUAAUAUGACAGGUGUGUGGGUGGAA---GGAUCUAGAACCCUGUCAUUUCU-----------------CUUUGUCCUGUUAAUUGCCACUGA .(((..((....((((((((..(.(((((....---..))))).)..))))))))....-----------------..))..)))............... ( -21.80) >DroSim_CAF1 19308 80 - 1 AAGGGUAAUAAUAUGACAGGUGUGUGGGUGGAA---GGAUCUAGAACCCUGUCAUUUCC-----------------CUUUGUCCUGUUAAUUGCCACUGA .((((((((....(((((((.....(((((..(---((.........)))..))...))-----------------).....))))))))))))).)).. ( -22.60) >DroEre_CAF1 19255 94 - 1 AAGGGUAAUAACAGGAUAGGUG--GGAGUGGAA---GGAUCUGGAACCCUGUCAUUUCCUU-GGCUGCUUUGGGUUCUUUGUCCUGUUAAUUGCCUCUGA .((((((((((((((((((...--(((......---...)))(((((((.((((......)-)))......))))))))))))))))).)))))).)).. ( -32.60) >DroYak_CAF1 25178 94 - 1 AAGCAUAAUAACAGGAUAGGUG--UGAGUGGAA---GGAUCUAGAACCCUGUCAUUUCCUU-GGCGGUUUUGGGUCCUUAGUCCUAUUAAUUGCCUCUGA ...........(((...(((((--..(((((((---((((((((((((..((((......)-)))))))))))))))))....)))))...)))))))). ( -30.80) >DroAna_CAF1 19822 93 - 1 -------AUGAAAGGCCAGGUGUUUGGAGGGAAAUGGGGGAUAGAAUCAUGCCAUUUCCUUAAGCUGAUUUUGGUCCUUUGUCCUGUUAAUUGCCUUUGA -------...((((((((((.....((((((((((((.((((...))).).))))))))))..(((......))))).....))))......)))))).. ( -26.80) >consensus AAGGGUAAUAACAGGACAGGUGUGUGAGUGGAA___GGAUCUAGAACCCUGUCAUUUCCUU_GGC_G_UUUGGGUCCUUUGUCCUGUUAAUUGCCUCUGA ...(((((((((((((((((.....((((((.....((........))...))))))(((...........)))...))))))))))).))))))..... (-10.94 = -12.92 + 1.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:26 2006