| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,644,302 – 8,644,392 |
| Length | 90 |
| Max. P | 0.877948 |
| Location | 8,644,302 – 8,644,392 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 79.04 |
| Mean single sequence MFE | -19.67 |
| Consensus MFE | -11.94 |
| Energy contribution | -12.41 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.877948 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8644302 90 + 27905053 ACUUUUACAAGCGCGUCGUUGCCACGACAUCAGCGACACC-CCCGCAUCUUUUUUCAUCUCCUC------CCCUUU---U-UUUCAUAGCAAGGGCAGCGU ..........(((((((((....)))))....(((.....-..)))..................------(((((.---(-(.....)).)))))..)))) ( -18.40) >DroSec_CAF1 71362 92 + 1 ACUUUUACAUGCGCGUCGUUGCCACGACAUCAGCGACACCCCCCGCAUCUUUUUUCAUCUCCUC------CCCUUU---UUUCUCAUAACAAGGGCAGCGU ..........(((((((((....)))))....(((........)))..................------(((((.---((......)).)))))..)))) ( -19.10) >DroSim_CAF1 87121 92 + 1 ACUUUUACAAGCGCGUCGUUGCCACGACAUCAGCGACACCCCCCGCAUCUUUUUUCAUCUCCUC------CCCUUU---UUUUUCAUGGCAAGGGCAGCGU ..........(((((((.((((((.(....).(((........)))..................------......---.......)))))).))).)))) ( -21.30) >DroEre_CAF1 84078 94 + 1 ACUUUUACAAGCGCGUCGUUGCCACGACAUCAGCCACACCC-CCGCACCUUUUUUCAUCCCCUG------CCCUUCCCCUAUUUUAUAACAAGGGCAGCGU ..........(((((((((....))))).............-....................((------(((((...............))))))))))) ( -19.76) >DroYak_CAF1 76163 90 + 1 ACUUUUACAAGCGCGUCGUUGCCACGACAUCAGCGACACCCCCCACACCUUAU---AUCCCCUU--------CUCCACUUAUUUUAUAACAAGGGCAGCGU ..........(((((((((((.........)))))))................---...(((((--------..................)))))..)))) ( -16.97) >DroPer_CAF1 78786 91 + 1 ACUUUUACAAGCGCGUUGUUGCCACGGCAUCAGUGGCACUUC-CCCAUCC----CCAGCCGCUUCUCCGCACCUC-----UUUUUGUCCCAGGGACAGCGU ..........(((((.((.(((....))).))(((((.....-.......----...))))).....))).....-----....(((((...))))))).. ( -22.46) >consensus ACUUUUACAAGCGCGUCGUUGCCACGACAUCAGCGACACCCCCCGCAUCUUUUUUCAUCCCCUC______CCCUUU___UUUUUCAUAACAAGGGCAGCGU ..........(((((((((((.........))))))).................................(((((...............)))))..)))) (-11.94 = -12.41 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:22 2006