Locus 3236

Sequence ID 3R_DroMel_CAF1
Location 8,644,115 – 8,644,210
Length 95
Max. P 0.967709
window5234

overview

Window 4

Location 8,644,115 – 8,644,210
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 88.35
Mean single sequence MFE -24.57
Consensus MFE -20.18
Energy contribution -20.93
Covariance contribution 0.75
Combinations/Pair 1.06
Mean z-score -3.32
Structure conservation index 0.82
SVM decision value 1.61
SVM RNA-class probability 0.967709
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8644115 95 + 27905053
AUUUGCGCCUCCUUGUUGGCCAACCACUAGCUGUCAUCAGCUGGCCCCAAACCCCAUUUUACUUUAGGGGAAUCCCUCACUUCUUGGCCAUAUCA
................(((((((...(((((((....))))))).......((((...........)))).............)))))))..... ( -26.90)
>DroSec_CAF1 71175 95 + 1
AUUUGCGCCUUCUUGUUGGCCAACCACUAGCUGUCAUCAGCUGGCCCCAAACCCCAUUUUACUCCAGGGGAAUCCCUCACUUCUUGGCCAUAUCA
................(((((((...(((((((....))))))).......((((...........)))).............)))))))..... ( -26.90)
>DroSim_CAF1 86934 95 + 1
AUUUGCGCCUCCUUGUUGGCCAACCACUAGCUGUCAUCAGCUGGCCCCAAACCCCAUUUUACUCCAGGGGAAUCCCUCACUUCUUGGCCAUAUCA
................(((((((...(((((((....))))))).......((((...........)))).............)))))))..... ( -26.90)
>DroEre_CAF1 83891 95 + 1
AUUUUCGCCUCCUUGUUGGCCAACCACUGGCUGUCAUCAGCUGGCCCCAAACCCCAUUUUACACCCGGGAAAUCCCUCACUUCUUGGCCAUAUCA
................(((((((...(..((((....))))..)......................(((....))).......)))))))..... ( -24.10)
>DroYak_CAF1 75976 95 + 1
AUUGGCGCCUCCUUGUUGGCCAACCACUGGCUGUCAUCAGCUGGCCCCAAACCCCAUUUUACUCCCGGGAAAUCCCUCACUUCUUGGCCAUAUCA
................(((((((...(..((((....))))..)......................(((....))).......)))))))..... ( -24.10)
>DroAna_CAF1 66287 83 + 1
AUUUGCGCCUUCCUGUUGGCCAACCGCUGGCUGUCAUC-GCU--CCUCAUCCCCCGACUUAUG---------GCCCUCACUUCUUGGCCAUAUCA
....(((.......((..((.....))..))......)-)).--...........((..((((---------(((..........))))))))). ( -18.52)
>consensus
AUUUGCGCCUCCUUGUUGGCCAACCACUAGCUGUCAUCAGCUGGCCCCAAACCCCAUUUUACUCCAGGGGAAUCCCUCACUUCUUGGCCAUAUCA
................(((((((...(((((((....)))))))......................(((....))).......)))))))..... (-20.18 = -20.93 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:21 2006