| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,633,167 – 8,633,272 |
| Length | 105 |
| Max. P | 0.767282 |
| Location | 8,633,167 – 8,633,272 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 76.33 |
| Mean single sequence MFE | -19.57 |
| Consensus MFE | -13.58 |
| Energy contribution | -13.50 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.767282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8633167 105 + 27905053 CUCGUCAUUAGGGCCAAAGUCACGAUUCGACUUUAUUGAAAGCACUUUAAUUUAAUGUGCGUGGAUUUUGCCUUUCCCAUUGCACUCCCUUA-ACUCCAUGAUUCC ...(((((.((((..((((((.......))))))......................((((((((............))).))))).))))..-.....)))))... ( -18.20) >DroPse_CAF1 71984 92 + 1 CUCAUCAUUAGCGGCAAAGUCACGAUUUGACUUUAUUGAAAGCACUUUAAUUUAAUGUGCGUGGAUU-UGCCUUUCGCUUUGCUGUUGC-------------CCCU ........((((((((((((((.....))))))).......((((...........))))(((((..-.....)))))...))))))).-------------.... ( -22.00) >DroWil_CAF1 84207 86 + 1 CUCAUCAUUAGCGCAAAAGUCACGAUUUGACUUUAUUGAAAGCACUUUAAUUUAAUGUGCGUGGAUUUUGCUUCUUACGUUUUA--------------------UA ............((((((..(((..((..(.....)..)).((((...........)))))))..)))))).............--------------------.. ( -15.40) >DroMoj_CAF1 102667 79 + 1 CUCAUCAUUAGCAGCAGAGUCACGAUUUGACUUUAUAGAAAGCACUUGAAUUUAAUGUGCGUGGAUUUUGCCUUCCACC--------------------------- ...............(((((((.....))))))).......((((...........))))(((((........))))).--------------------------- ( -17.40) >DroAna_CAF1 56134 106 + 1 CUCGUCAUUAGCGCCAAAGUCACGAUUUGACUUUAUUGAAAGCACUUUAAUUUAAUGUGCGUGGAUUUUGCUUUUCACGUUUCUGUUUCUCUUCCUUGGGCAUUUU ............((((((((((.....)))))))...((((((((...........))))(((((........))))).))))...............)))..... ( -22.40) >DroPer_CAF1 68050 92 + 1 CUCAUCAUUAGCGGCAAAGUCACGAUUUGACUUUAUUGAAAGCACUUUAAUUUAAUGUGCGUGGAUU-UGCCUUUCGCUUUGCUGUUGC-------------CCCU ........((((((((((((((.....))))))).......((((...........))))(((((..-.....)))))...))))))).-------------.... ( -22.00) >consensus CUCAUCAUUAGCGCCAAAGUCACGAUUUGACUUUAUUGAAAGCACUUUAAUUUAAUGUGCGUGGAUUUUGCCUUUCACGUUGCUGUU_C_______________CU ...............(((((((.....))))))).......((((...........))))(((((........)))))............................ (-13.58 = -13.50 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:19 2006