Locus 3229

Sequence ID 3R_DroMel_CAF1
Location 8,614,323 – 8,614,415
Length 92
Max. P 0.992399
window5220

overview

Window 0

Location 8,614,323 – 8,614,415
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 99.13
Mean single sequence MFE -23.89
Consensus MFE -22.82
Energy contribution -22.82
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.96
SVM decision value 2.33
SVM RNA-class probability 0.992399
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8614323 92 + 27905053
GCUGUGAGUAAAGUAAAUACCAGCUGAAUGCAACAUCGGGACAAAGGCGGCUGGAAAAGAAAAGACAGAGACACUUUCCCAGAUGGACAGCA
(((((..(((.(((........)))...)))..((((((((..(((....(((............))).....))))))).)))).))))). ( -22.80)
>DroSec_CAF1 41880 92 + 1
GCUGUGAGUAAAGUAAAUACCAGCUGAAUGCAACAUCGGGACAAAGGCGGCUGGGAAAGAAAAGACAGAGACACUUUCCCAGAUGGACAGCA
(((((..((..........((.(((...(((........).))..)))))(((((((((..............)))))))))))..))))). ( -23.64)
>DroSim_CAF1 55897 92 + 1
GCUGUGAGUAAAGUAAAUACCAGCUGAAUGCAACAUCGGGACAAAGGCGGCUGGGAAAGAAAAGACAGAGACACUUUCCCAGAUGGACAGCA
(((((..((..........((.(((...(((........).))..)))))(((((((((..............)))))))))))..))))). ( -23.64)
>DroEre_CAF1 53655 92 + 1
GCUGUGAGUAAAGUAAAUACCGGCUGAAUGCAACAUCGGGACAAAGGCGGCUGGGAAAGAAAAGACAGAGACACUUUCCCAGAUGGACAGCA
(((((..((..........(((.((...(((........).)).)).)))(((((((((..............)))))))))))..))))). ( -25.74)
>DroYak_CAF1 46000 92 + 1
GCUGUGAGUAAAGUAAAUACCAGCUGAAUGCAACAUCGGGACAAAGGCGGCUGGGAAAGAAAAGACAGAGACACUUUCCCAGAUGGACAGCA
(((((..((..........((.(((...(((........).))..)))))(((((((((..............)))))))))))..))))). ( -23.64)
>consensus
GCUGUGAGUAAAGUAAAUACCAGCUGAAUGCAACAUCGGGACAAAGGCGGCUGGGAAAGAAAAGACAGAGACACUUUCCCAGAUGGACAGCA
(((((..(((.(((........)))...)))..((((((((..(((....(((............))).....))))))).)))).))))). (-22.82 = -22.82 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:08 2006