Locus 3226

Sequence ID 3R_DroMel_CAF1
Location 8,598,987 – 8,599,085
Length 98
Max. P 0.852420
window5217

overview

Window 7

Location 8,598,987 – 8,599,085
Length 98
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 77.59
Mean single sequence MFE -29.98
Consensus MFE -14.95
Energy contribution -15.18
Covariance contribution 0.23
Combinations/Pair 1.31
Mean z-score -2.22
Structure conservation index 0.50
SVM decision value 0.79
SVM RNA-class probability 0.852420
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8598987 98 - 27905053
CCUUUCAUCCGUCGC-CGAGGGUAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGC-CC-AGCAAGCGGAAACGG
........((((..(-((...((((((((..(((((............)))))..))))))))..(((((((((....))))-..-))))).)))..)))) ( -35.80)
>DroVir_CAF1 33164 90 - 1
CCUUCUGUUUUCCGCCCAUCAGCGGCUACUAUAAAAGCUUCAUAAACAUUUUACAGC--UUGCAGUUGUUGCAGGAAACUGCGCC-AGGCC-CG-------
...((((....((((......))))...........((..............(((((--.....))))).((((....)))))))-)))..-..------- ( -21.10)
>DroPse_CAF1 33033 97 - 1
CCUGAGCUCCG-AGC-CGAGGGCAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGCUGCAGCAGGAAACAGCGCC-AGCAA-CGGAAACAG
(((..((....-.))-..)))((((((((..(((((............)))))..)))))))).((((..((.(....).))..)-)))..-.(....).. ( -31.80)
>DroWil_CAF1 49258 89 - 1
UGUUG--G-----CC-CGCGGGUGGCAGCCAUAAAAGCUUCAUAAACAUUUUACAGC--UUGCAGUUGUUGCAGGAAACUGCACC-AGCAA-CGGAAACAG
((((.--.-----((-.((.(((....)))....(((((...............)))--)))).((((.(((((....))))).)-)))..-.)).)))). ( -26.96)
>DroYak_CAF1 29896 98 - 1
CCUUUUAUCCGUCGC-CUAGGGUAGCCACCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGC-CC-AGCAAGCGGAAACGG
........((((..(-(...(((....)))......((.................((....))..(((((((((....))))-..-)))))))))..)))) ( -27.00)
>DroAna_CAF1 24435 99 - 1
CGGCUCUUGCCGCGC-CGAGGGCAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGC-CCUAGCAAACGGAAACAG
((((....))))..(-((...((((((((..(((((............)))))..))))))))..(((((((((....))))-...))))).)))...... ( -37.20)
>consensus
CCUUUCAUCCG_CGC_CGAGGGCAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGC_CC_AGCAA_CGGAAACAG
....................(((((((((.......((.................))....)))))))))((((....))))...........(....).. (-14.95 = -15.18 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:05 2006