| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,588,265 – 8,588,364 |
| Length | 99 |
| Max. P | 0.900834 |
| Location | 8,588,265 – 8,588,364 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 84.33 |
| Mean single sequence MFE | -22.00 |
| Consensus MFE | -19.26 |
| Energy contribution | -19.35 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.900834 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8588265 99 + 27905053 -----------GACCCUU---ACGGCCACAUCAAAAAGAAUAGUA----AAGUUGGAAGUUUUAAUUUGGAAACCCAAAACCCCCAGCAAACUGUCUCAAUGCACAAGGCCACAACA -----------.......---..((((....((...(((.((((.----..(((((..(((((.....(....)..)))))..)))))..)))))))...)).....))))...... ( -20.00) >DroPse_CAF1 22829 113 + 1 CAUCCCCAUCGGACCCCUCAUCCUGCCACAUCAAAAAGAAUAGUC----AAGCUGGAAGUUUUAAUUUGGAAACCAAAAGCCCCCAGCAAACUGUCUCAACUCACAGGGCCACAACA ....(((...(((.......)))..............(((((((.----..(((((..(((((.....(....)..)))))..)))))..))))).))........)))........ ( -21.30) >DroEre_CAF1 27477 99 + 1 -----------GACCCUU---ACGGCCACAUCAAAAAGAAUAGUA----AAGUUGGAAGUUUUAAUUUGGAAACCCAAAACCCCCAGCAAACUGUCUCAGUGCACAGGGCCACAACA -----------.......---..((((....((...(((.((((.----..(((((..(((((.....(....)..)))))..)))))..)))))))...)).....))))...... ( -22.20) >DroYak_CAF1 18047 99 + 1 -----------GACCCUU---ACGGCCACAUCAAAAAGAAUAGUA----AAGUUGGAAGUUUUAAUUUGGAAACCCGAAACCCCCAGCAAACUGUCUCAGUGCACAGGGCCACAACA -----------.......---..((((....((...(((.((((.----..(((((..(((((.....(....)..)))))..)))))..)))))))...)).....))))...... ( -22.60) >DroAna_CAF1 14477 105 + 1 ------------CCCCUUGGCACGGCCACAUCAAAAAGAAUGGCCAAGCAAGUAGGAAGUUUUAAUUUGGAAACCCGAAACCCCCAGCAAACUGUCUCAAUGCACAGGGCCACAACA ------------..((((((((.(((((..((.....)).)))))......((.((..(((((.....(....)..)))))..)).))............))).)))))........ ( -24.60) >DroPer_CAF1 20270 113 + 1 CAUCCCCAUCGGACCCCUCAUCCUGCCACAUCAAAAAGAAUAGUC----AAGCUGGAAGUUUUAAUUUGGAAACCAAAAACCCCCAGCAAACUGUCUCAACUCACAGGGCCACAACA ....(((...(((.......)))..............(((((((.----..(((((..(((((.....(....)..)))))..)))))..))))).))........)))........ ( -21.30) >consensus ___________GACCCUU___ACGGCCACAUCAAAAAGAAUAGUA____AAGUUGGAAGUUUUAAUUUGGAAACCCAAAACCCCCAGCAAACUGUCUCAAUGCACAGGGCCACAACA .......................((((........................(((((..(((((.....(....)..)))))..)))))...((((........))))))))...... (-19.26 = -19.35 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:03 2006