| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,586,567 – 8,586,661 |
| Length | 94 |
| Max. P | 0.999795 |
| Location | 8,586,567 – 8,586,661 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 88.50 |
| Mean single sequence MFE | -15.31 |
| Consensus MFE | -13.46 |
| Energy contribution | -13.26 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -3.20 |
| Structure conservation index | 0.88 |
| SVM decision value | 4.10 |
| SVM RNA-class probability | 0.999795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8586567 94 + 27905053 CAUUGGACACUUUUGCAAAACUAAUAACAAAAUAUUAAGUUUACACAAAUUCGAGCCAAAAAAAAAAAAAAAAAAUAGGUCGAGCAAGAGGUA-A ......((.(((((((.(((((((((......)))).)))))........((((.((....................))))))))))))))).-. ( -15.95) >DroSec_CAF1 14116 92 + 1 CAUUGGACACUUUUGCAAAACUAAUAACAAAAUAUUAAGUUUACACAAAUUCGAGCCAAAAAAAAAAAAAAAAA--UGGUCGAGCAAGAGGUA-A ......((.(((((((.(((((((((......)))).)))))........((((.(((................--)))))))))))))))).-. ( -17.09) >DroSim_CAF1 26908 87 + 1 CAUUGGACACUUUUGCAAAACUAAUAACAAAAUAUUAAGUUUACACAAAUUCGAGCCAAAAAAAAAAAA-------AGGUCGAGCAAGAGGUA-A ......((.(((((((.(((((((((......)))).)))))........((((.((............-------.))))))))))))))).-. ( -16.42) >DroEre_CAF1 25850 84 + 1 CAUUGGACACUUUUGCAAAACUAAUAACAAAAUAUUAAGUUUACACAAAUUCGAGUAAAAAA----AGA-------AGGUCAAGCAAGAGGUAGA ......((.(((((((.(((((((((......)))).)))))..((...(((..........----.))-------).))...)))))))))... ( -12.10) >DroYak_CAF1 16338 80 + 1 CAUUGGACACUUUUGCAAAACUAAUAACAAAAUAUUAAGUUUACACAAAUUCGAGUAAAAAA--------------AAGUCGAGCAAGAGGUA-A ......((.(((((((.(((((((((......)))).)))))........((((.(......--------------.).))))))))))))).-. ( -15.00) >consensus CAUUGGACACUUUUGCAAAACUAAUAACAAAAUAUUAAGUUUACACAAAUUCGAGCCAAAAAAAAAAAA_______AGGUCGAGCAAGAGGUA_A ......((.(((((((.(((((((((......)))).)))))........((((.(.....................).)))))))))))))... (-13.46 = -13.26 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:59 2006