| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,585,405 – 8,585,505 |
| Length | 100 |
| Max. P | 0.745643 |
| Location | 8,585,405 – 8,585,505 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 89.77 |
| Mean single sequence MFE | -16.50 |
| Consensus MFE | -14.26 |
| Energy contribution | -14.45 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8585405 100 + 27905053 GGCGUAUACGCAAUGCAAAUAUUCCGCAAUGCAUUGUUUAUGCUCCUGUUUCGCUUAUACUUUUU-CACUCAAAUAUUUGUUCAUUUUUUCC----A--UCUUUUG--U ((.(((((.((((((((............)))))))).))))).))...................-..........................----.--.......--. ( -16.50) >DroSec_CAF1 12965 100 + 1 GGCGUAUACGCAAUGCAAAUAUUCCGCAAUGCAUUGUUUAUGCUCCUGUUUCGCUUAUACUUUUU-CACUCAAAUAUUUGUUCAUUUUUUCC----A--UCUUUUG--U ((.(((((.((((((((............)))))))).))))).))...................-..........................----.--.......--. ( -16.50) >DroSim_CAF1 25234 100 + 1 GGCGUAUACGCAAUGCAAAUAUUCCGCAAUGCAUUGUUUAUGCUCCUGUUUCGCUUAUACUUUUU-CACUCAAAUAUUUGUUCAUUUUUUCC----A--UCUUUUG--U ((.(((((.((((((((............)))))))).))))).))...................-..........................----.--.......--. ( -16.50) >DroEre_CAF1 24663 100 + 1 GGCGUAUACGCAAUGCAAAUAUUCCGCAAUGCAUUGUUUAUGCUCCUGUUUCGCUUAUACUUUUU-CACUCAAAUAUUUGUUCUUUUUUUCC----A--UCUUUUG--C ((.(((((.((((((((............)))))))).))))).))...................-..........................----.--.......--. ( -16.50) >DroYak_CAF1 15220 100 + 1 GGCGUAUACGCAAUGCAAAUAUUCCGCAAUGCAUUGUUUAUGCUCCUGUUUCGCUUAUACUUUUU-CACUCAAAUAUUUGUUCUUCUUUUCC----A--UCUUUUG--U ((.(((((.((((((((............)))))))).))))).))...................-..........................----.--.......--. ( -16.50) >DroAna_CAF1 11925 109 + 1 GGCGUAGACGCAAUGCAAAUAUUCAGAAAUGCAUUGUUUAUGUCCAUGUUUUGUUUAUACUCUUUCCGCUUCCAUAUUUUUCCAUUUCAUCUUAGCAGGUUUUUUGGUU ((((.(((.((((((((............)))))))).((((..((.....))..)))).)))...))))...........(((....((((....))))....))).. ( -16.50) >consensus GGCGUAUACGCAAUGCAAAUAUUCCGCAAUGCAUUGUUUAUGCUCCUGUUUCGCUUAUACUUUUU_CACUCAAAUAUUUGUUCAUUUUUUCC____A__UCUUUUG__U ((.(((((.((((((((............)))))))).))))).))............................................................... (-14.26 = -14.45 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:58 2006