| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,584,830 – 8,584,922 |
| Length | 92 |
| Max. P | 0.621896 |
| Location | 8,584,830 – 8,584,922 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 80.90 |
| Mean single sequence MFE | -24.83 |
| Consensus MFE | -15.55 |
| Energy contribution | -15.42 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.621896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8584830 92 + 27905053 AACCCAGCCGGCAAGUAGGUAAUAGUUUCAGGUAAAAGCCUGUAAACGAGCAAAACUGGCACAAACGAGCUGCAAGUUGA-AUGCAGACGAAG-------- ......(((((.......((....(((((((((....))))).))))..))....))))).....((..(((((......-.))))).))...-------- ( -23.00) >DroVir_CAF1 15606 88 + 1 AACUGAGCUUGCAAGUGGGUAAUAGUUUCAGGUAAAAGCCUGUAAACGAGCA-AACUGGCACAAACGAGCAGCUAGCUCA-AUGCG---GGCU-------- .....((((((((.((.(((....(((((((((....))))).)))).....-.))).))......((((.....)))).-.))))---))))-------- ( -30.20) >DroPse_CAF1 19656 96 + 1 GAC----UCGGCGAGCAGGUAAUAGUUUCAGGUGAAAGCCUGUAAACGAGCAAAACUGGCACAAACGAGCUGAAAGUUGA-AUGCAGACGACGGCGACGGC ...----(((.((...........(((((((((....))))).))))..(((.(((((((........)))...))))..-.)))......)).))).... ( -24.90) >DroGri_CAF1 12553 91 + 1 AACUGAGUCGGCAAGUGGGUAAUAGUUUCAGGUAAAAGCCUGUAAACGAGCA-AACUGGCACAAACGAGCAGCUAGCUGA-AUGCUCCUGACG-------- ......(((((.............(((((((((....))))).))))(((((-..(((((...........)))))....-.)))))))))).-------- ( -25.70) >DroEre_CAF1 24020 92 + 1 AGCUCAGCGGGCAAGUAGGUAAUAGUUUCAGGUAAAAGCCUGUAAACGAGCAAAACUGGCACAAACGAGCUGCAAGUUGA-AUGCAGACGAAG-------- .(((((((..(((.((..((....(((((((((....))))).))))..((.......))....))..)))))..)))))-..))........-------- ( -23.10) >DroMoj_CAF1 35776 89 + 1 AUCUGAGUCGGCAAGUGGGUAAUAGUUUCAGGUAAAAGCCUGUAAACGAGCA-AACUGGCACAAACGAGCAGCUAGCUAGCGAGUG---GAGG-------- .(((.(.(((((.(((..((....(((((((((....))))).))))..)).-.))).)).......(((.....)))..))).))---))..-------- ( -22.10) >consensus AACUGAGCCGGCAAGUAGGUAAUAGUUUCAGGUAAAAGCCUGUAAACGAGCA_AACUGGCACAAACGAGCAGCAAGCUGA_AUGCAGACGACG________ ..........(((.((.(((....(((((((((....))))).)))).......))).)).......(((.....)))....)))................ (-15.55 = -15.42 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:57 2006