Locus 322

Sequence ID 3R_DroMel_CAF1
Location 1,243,990 – 1,244,081
Length 91
Max. P 0.593539
window543

overview

Window 3

Location 1,243,990 – 1,244,081
Length 91
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 82.35
Mean single sequence MFE -23.93
Consensus MFE -17.06
Energy contribution -16.62
Covariance contribution -0.44
Combinations/Pair 1.26
Mean z-score -1.59
Structure conservation index 0.71
SVM decision value 0.12
SVM RNA-class probability 0.593539
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1243990 91 - 27905053
AGGGGAUUCCCCUUACUAACAGCCUUGCUAACACCACGGCUCUGAAUUAAAUGCACUUU-----CAGGGGUUUUCCUGUUUGCAACUAGCAUGCCA
.(((((..((((........((((.((.......)).)))).((((...........))-----))))))..)))))((.(((.....))).)).. ( -23.20)
>DroSec_CAF1 17831 91 - 1
AGGGGAUUCCCCUUACUAACAGCCUUGCUAACAGCCCUGCUCUGAAUUAAUUGCACUUU-----CAGGGGUUUUCCUGUUUGCAACUAGCAUGCCA
(((((...)))))........((.((((.(((((.....(((((((...........))-----)))))......))))).))))...))...... ( -22.90)
>DroSim_CAF1 18150 91 - 1
AGGGGAUUCCUCUUACUAACAGCCUUGCUAACUGCACGGCUCUGAAUUAAUUGCACUUU-----CAGGGGUUUUCCUGUUUGCAACUAGCAUGCCA
.(((((..(((.........((((.(((.....))).))))(((((...........))-----))))))..)))))((.(((.....))).)).. ( -25.40)
>DroEre_CAF1 18193 83 - 1
AGGGAAUUCCCCU------------UGCGAACAGCACGGUUCUGAAUCAAUUGCACUUUAAUUGCAGGGGUUUUCCUGCUUGCAGGUGG-AUGUCA
...((..(((.((------------((((...((((.((....(((((..(((((.......))))).))))).)))))))))))).))-)..)). ( -24.20)
>consensus
AGGGGAUUCCCCUUACUAACAGCCUUGCUAACAGCACGGCUCUGAAUUAAUUGCACUUU_____CAGGGGUUUUCCUGUUUGCAACUAGCAUGCCA
.(((((..(((((.............((.....))...((............))...........)))))..)))))((.(((.....))).)).. (-17.06 = -16.62 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:24 2006