Locus 3219

Sequence ID 3R_DroMel_CAF1
Location 8,584,640 – 8,584,733
Length 93
Max. P 0.871999
window5208

overview

Window 8

Location 8,584,640 – 8,584,733
Length 93
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 90.81
Mean single sequence MFE -30.68
Consensus MFE -19.53
Energy contribution -20.01
Covariance contribution 0.48
Combinations/Pair 1.18
Mean z-score -4.86
Structure conservation index 0.64
SVM decision value 0.87
SVM RNA-class probability 0.871999
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8584640 93 - 27905053
AUAGUUGCGAGUAUGC--A-GUUUUUUAG-CUGCAGAGCAGCUGCAGAAAGUUGCUCAUCUGAUUACAUAUUUAUUCGCAAUUUAUGCAUAAUUCUA
..((((((((((((((--(-(((....))-)))))((((((((......))))))))...............))))))))))).............. ( -33.70)
>DroVir_CAF1 15371 97 - 1
UUCCUUGCAAAUCUGUUAAGGUAUUAUAUUUUGUUGAGCAUCUGCAGCUAGUUGCUCAUCUGAUUACAUAUUUAUCUACAAUUUAUACAUAAUUUUG
..(((((((....)).)))))...((((..((((((((((.(((....))).))))))...(((.........))).))))..)))).......... ( -15.60)
>DroSec_CAF1 12207 93 - 1
AUAGUUGCGAGUAUGC--A-GUUUUUUAG-CUGCAGAGCAGCUGCAGAAAGUUGCUCAUCUGAUUACAUAUUUAUUCGCAAUUUAUGCAUAAUUCUA
..((((((((((((((--(-(((....))-)))))((((((((......))))))))...............))))))))))).............. ( -33.70)
>DroSim_CAF1 24455 93 - 1
AUAGUUGCGAGUAUGC--A-GUUUUUUAG-CUGCAGAGCAGCUGCAGAAAGUUGCUCAUCUGAUUACAUAUUUAUUCGCAAUUUAUGCAUAAUUCUA
..((((((((((((((--(-(((....))-)))))((((((((......))))))))...............))))))))))).............. ( -33.70)
>DroEre_CAF1 23820 93 - 1
AUAGUUGCGAGUAUGC--A-GUUUUUUAG-CUGCAGAGCAGCUGCAGAAAGUUGCUCAUCUGAUUACAUAUUUAUUCGCAAUUUAUGCAUAAUUCUA
..((((((((((((((--(-(((....))-)))))((((((((......))))))))...............))))))))))).............. ( -33.70)
>DroYak_CAF1 14352 93 - 1
AUAGUUGCGAGUAUGC--A-GUUUUUUAG-CUGCAGAGCAGCUGCAGAAAGUUGCUCAUCUGAUUACAUAUUUAUUCGCAAUUUAUGCAUAAUUCUA
..((((((((((((((--(-(((....))-)))))((((((((......))))))))...............))))))))))).............. ( -33.70)
>consensus
AUAGUUGCGAGUAUGC__A_GUUUUUUAG_CUGCAGAGCAGCUGCAGAAAGUUGCUCAUCUGAUUACAUAUUUAUUCGCAAUUUAUGCAUAAUUCUA
..((((((((((((((................)))((((((((......))))))))...............))))))))))).............. (-19.53 = -20.01 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:56 2006