| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,582,533 – 8,582,626 |
| Length | 93 |
| Max. P | 0.533588 |
| Location | 8,582,533 – 8,582,626 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 79.12 |
| Mean single sequence MFE | -20.12 |
| Consensus MFE | -13.09 |
| Energy contribution | -13.65 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.533588 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8582533 93 - 27905053 AUUGCGCCGAAUGGCAAAUUGCUCUAAGCGCUCGGCAAUUUAAACUAUUCGGGCUUAAC--GACAUGCGGA------CAAUAAAAUCGUUUAAAUGUAAUC ...((.((((((((.((((((((..........))))))))...)))))))))).....--.((((..(((------(.........))))..)))).... ( -22.30) >DroPse_CAF1 17144 98 - 1 AUUGCGCCGAGUGGCAAAUUGCUUAAAGCUCGACGCAAUUGAAACUAGUCGGACAGAUCCCCAGAUAAUAAAAUAAACAACGUAACCGUUAA-A--UAUUC ((((((.((((((((.....)))....))))).))))))........(((((........)).)))............((((....))))..-.--..... ( -19.10) >DroSec_CAF1 10075 99 - 1 AUUGCGCCGAGUGGCAAAUUGCUCUAAGCGCUCGGCAAUUUAAACUAUUCGGGCUUAAC--GACAUACGGACAUAAACAAUAAAAUCGUUUAAAUGUAAUC (((((((((((((((.....))......)))))))).((((((((...(((.......)--)).....(........).........))))))))))))). ( -22.80) >DroEre_CAF1 21568 99 - 1 AUUGCGCCGAAUGGCAAAUUGCUCUAAGCGCUCCGCAAUUUAAACUAUUCGGGCUUAAC--GACAUACGGACAUAAACAAUAAAAUCGUUUAAGUGUAAUC (((((.((((((((.(((((((............)))))))...))))))))(((((((--((......................))).))))))))))). ( -21.75) >DroYak_CAF1 12119 99 - 1 AUUGCCUCGAAUGGCAAAUUGCUCUAAGCGCUCCGCAAUUUAAACUAUUCGUGCUUAAC--GACAUACGGACAUAAACAAUAAAAUCGCUUAAAUGUAAUC .(((((......)))))(((((..((((((.((((..........(((((((.....))--)).)))))))...............))))))...))))). ( -18.39) >DroAna_CAF1 9499 98 - 1 AUUGCGACGAGUGGCAAAUUGCUUAAAGCUCUCAGCAGUUUAAACUAUUCCAGUGGGCA--GACAAAACAAAAUAAAUAACGCAAUCGUUUA-AUGAAAUC ((((((..((((((.((((((((..........))))))))...))))))..((.(...--..)...))...........))))))......-........ ( -16.40) >consensus AUUGCGCCGAAUGGCAAAUUGCUCUAAGCGCUCCGCAAUUUAAACUAUUCGGGCUUAAC__GACAUACGGACAUAAACAAUAAAAUCGUUUAAAUGUAAUC ...((.((((((((.(((((((............)))))))...))))))))))............................................... (-13.09 = -13.65 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:55 2006