Locus 3217

Sequence ID 3R_DroMel_CAF1
Location 8,580,806 – 8,580,899
Length 93
Max. P 0.876869
window5206

overview

Window 6

Location 8,580,806 – 8,580,899
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 73.28
Mean single sequence MFE -13.43
Consensus MFE -8.33
Energy contribution -8.33
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.62
SVM decision value 0.90
SVM RNA-class probability 0.876869
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8580806 93 - 27905053
GCAUUCAGUGCUGCCAACUUGGCUAUACUUUAGCUAAAUAAAAAUUAUUCUCCACAUAAUACAAUAUAGUAAAAAGCGUACACAUGGCUUUCC
((((...)))).((((..(((((((.....)))))))......................(((......))).............))))..... ( -14.80)
>DroSec_CAF1 8371 73 - 1
GCAUUCAGUGCUGUCAACUUGGCUAUAAUUUAGCUAAAGUAAAAUUACUCUUCACAUAAUACAUCAUAG-----------------GCUU---
((((...)))).(((...(((((((.....)))))))((((....))))...................)-----------------))..--- ( -11.30)
>DroSim_CAF1 20062 71 - 1
GCAUUCAGUGCUGCCAACUUGGCUAUAAUUUAGCUAA-GUCAAA----UCUCCACAUAAUACAUCAUAG-----------------GCUAUUC
((((...)))).(((.(((((((((.....)))))))-))....----........((........)))-----------------))..... ( -14.20)
>consensus
GCAUUCAGUGCUGCCAACUUGGCUAUAAUUUAGCUAAAGUAAAAUUA_UCUCCACAUAAUACAUCAUAG_________________GCUUU_C
((((...)))).......(((((((.....)))))))........................................................ ( -8.33 =  -8.33 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:54 2006