| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,580,060 – 8,580,160 |
| Length | 100 |
| Max. P | 0.894874 |
| Location | 8,580,060 – 8,580,160 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 80.63 |
| Mean single sequence MFE | -23.64 |
| Consensus MFE | -14.77 |
| Energy contribution | -13.67 |
| Covariance contribution | -1.11 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8580060 100 - 27905053 CCGGCGCAUUCAUGCAGAUUUUAUGGCGCAAAUUGAAAACGUCAUGAAACU---GCAACACUGCCCGCAACAAAGUAAAU----UCCCACCAAC--UUCCAAAAACAAA .(((.(((....(((((.((((((((((...........))))))))))))---)))....)))))).............----..........--............. ( -24.00) >DroGri_CAF1 7564 90 - 1 CCGGCGCAUUCAUGUAGAUUUUAUGGUGCAAAUUGAAAACGUCAUGAAAUU---GUAACACUGUCCGCAACAAAGUAAUG---------CCAGC--U---AAGAGAG-- ..(((((...(((((.(((((((((..(...........)..)))))))))---...))).))...)).....(....))---------))...--.---.......-- ( -14.70) >DroEre_CAF1 19145 100 - 1 CCGGCGCAUUCAUGCAGAUUUUAUGGCGCAAAUUGAAAACGUCAUGAAACU---GCAACACUGUCCGCAACAAAGUAAAU----UCGCACCAAC--UGCCAAAAAAAAA ..((.((.....(((((.((((((((((...........))))))))))))---)))((..(((.....)))..))....----..)).))...--............. ( -23.10) >DroYak_CAF1 9654 98 - 1 CCGGCGCAUUCAUGCAGAUUUUAUGGCGCAAAUUGAAAACGUCAUGAAACU---GCAACACUGUCCGCAACAAAGUAAAU----UCCCACCAAC--UCCCAAAAAAA-- .(((.(((....(((((.((((((((((...........))))))))))))---)))....)))))).............----..........--...........-- ( -21.30) >DroAna_CAF1 7264 94 - 1 CUGGUGCAUUCAUGCAGAUUUUAUGGCGCAAAUUGAAAACGUCAUGAAACU---GCAACACUGUCCGCAACAAAGUGAAA----CCCGACC------CCCAAAAAAG-- ..(((.(.....(((((.((((((((((...........))))))))))))---))).((((...........))))...----...))))------..........-- ( -22.00) >DroPer_CAF1 11544 103 - 1 CCGGCGCAUUCAUGCAGAUUUUAUGGCGUAAAUUGAAAACGCCAUGAAACUGCUGCAACAGUGUCUGCAACAUAGUGAGGGAGCCCCCUCCCCCACCCCUACA------ ..(((((......((((.(((((((((((.........))))))))))))))).......))))).........(((.(((((....))))).))).......------ ( -36.72) >consensus CCGGCGCAUUCAUGCAGAUUUUAUGGCGCAAAUUGAAAACGUCAUGAAACU___GCAACACUGUCCGCAACAAAGUAAAU____UCCCACCAAC__UCCCAAAAAAA__ .(((.(((....(((((.((((((((((...........))))))))))))...)))....)))))).......................................... (-14.77 = -13.67 + -1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:53 2006