| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,578,247 – 8,578,365 |
| Length | 118 |
| Max. P | 0.514327 |
| Location | 8,578,247 – 8,578,365 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.36 |
| Mean single sequence MFE | -37.98 |
| Consensus MFE | -31.17 |
| Energy contribution | -30.75 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.82 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8578247 118 + 27905053 CCACGUUGCAGAUGAAUUGAUUGCAAUGCGGCGAACCGUCGGCGAUGGUGACACCUUUAACGGGGAACCAAUUUGUUGUUGGCGGUGUUAGAGGCGAGUAUCUG--AAAGGAAAGAGGUG ((.((((((((.........)))))))).))...((((((...))))))..(((((((...((....)).((((((..(((((...)))))..)))))).(((.--...))).))))))) ( -34.50) >DroVir_CAF1 7124 118 + 1 CCACGUUGCAGAUGAAUUGAUUGCAAUGCGACGAGCCGUCGGCAAUGGUGACACCUUUGACGGGAAACCAAUUUGUUGUCGGCGGCGUUAGCGGCGAGUAUCUG--CAAAAACAUAGAAC .....(((((((((......((((...((.....(((((((((((((....).........((....)).....))))))))))))....)).)))).))))))--)))........... ( -45.20) >DroGri_CAF1 6052 118 + 1 CCACGUUGCAGAUGAAUUGAUUGCAAUGCGACGAGCCUUCGGCAAUGGUGACACCUUUGACGGGAAACCAAUUUGUUGUCGGCGGCGUUAGCGGCGAAUAUCUG--CAAAUAUAUACACA .....(((((((((..(((.(((((((((.....(((..((((((((....))........((....))...))))))..))).))))).))))))).))))))--)))........... ( -37.60) >DroWil_CAF1 29200 118 + 1 CCACAUUGCAGAUGAAUUGAUUGCAAUGCGACGAACCAUCGGCUAUGGUGACACCUUUAACGGGAAACCAAUUUGUUGUUGGUGGUGUGACUGGUGAAUAUCUA--CAAAGAAAGAGAUG ((((((.((.((((..(((.((((...)))))))..)))).)).)))((.(((((.(((((((.(((....))).))))))).))))).)))))....(((((.--(.......)))))) ( -30.00) >DroMoj_CAF1 26868 118 + 1 CCACGUUGCAGAUGAAUUGAUUGCAAUGCGACGAGCCGUCGGCUAUGGUGACACCUUUGACGGGAAACCAAUUUGUUGUUGGCGGCGUUAGCGGCGAGUAUCUG--CAAAAGCAUAGAAA .....(((((((((......((((...((.....(((((((((..((....))........((....))........)))))))))....)).)))).))))))--)))........... ( -40.30) >DroAna_CAF1 5526 120 + 1 CCACGUUGCAGAUGAAUUGAUUGCAAUGCGGCGAACCGUUGGCAAUGGUGACACCUUUAACGGGGAACCAAUUUGUUGUCGGCGGAGUUAGAGGCGAGUAUCUGCAAAAGGAGAGAGACA ((...(((((((((..((((((((...((((....))))..)))))(....).((((((((((....))..(((((.....)))))))))))))))).)))))))))..))......... ( -40.30) >consensus CCACGUUGCAGAUGAAUUGAUUGCAAUGCGACGAACCGUCGGCAAUGGUGACACCUUUAACGGGAAACCAAUUUGUUGUCGGCGGCGUUAGCGGCGAGUAUCUG__CAAAGAAAGAGAAA ((.(((((((..((.........)).))))))).((((((((((((((.....))......((....)).....))))))))))))......)).......................... (-31.17 = -30.75 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:52 2006