| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,570,554 – 8,570,648 |
| Length | 94 |
| Max. P | 0.920786 |
| Location | 8,570,554 – 8,570,648 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 57.01 |
| Mean single sequence MFE | -25.82 |
| Consensus MFE | -13.11 |
| Energy contribution | -12.57 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.51 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.920786 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8570554 94 - 27905053 CAAACCCAACAAAUUGC-CAAAGAGGCGCCGCCGGUGCUCGGAGGGAUU------------UUUUGAGUCCAGGACUAGGCGCCAAAGCAAAA-GACCCACUCCUGGA------ .............((((-......((((((.((((.((((((((.....------------)))))))))).))....))))))...))))..-...(((....))).------ ( -27.30) >DroGri_CAF1 37752 96 - 1 CAAACACAACAAAUUACCCAAAGAGGCGCCGUCGGCAUUCCGUGUGGCA------------UU-----UGUG-GCACAGGCGCCAACAAGCACACACACACACACAGCCCAACA ......................(.((((((...))).....(((((((.------------.(-----((((-((......))).)))))).))))).........)))).... ( -24.90) >DroAna_CAF1 26076 102 - 1 CAAACACAACAAAUUGC-CAAAGAGGCGCCGGCGGUGCCUGCUAAGGUUUUUCUUUUCGUUUUUUUUUUCCG---CGAGGCGCCAAAGCAAAA--CCUUACUCAAAGA------ .............((((-......((((((.((((.((((....)))).....................)))---)..))))))...))))..--.............------ ( -25.25) >consensus CAAACACAACAAAUUGC_CAAAGAGGCGCCGCCGGUGCUCGGUGAGGUU____________UUUU___UCCG_G_CCAGGCGCCAAAGCAAAA__ACACACUCAAAGA______ ........................((((((.((((...))))..........................((......)))))))).............................. (-13.11 = -12.57 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:49 2006