| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,545,523 – 8,545,624 |
| Length | 101 |
| Max. P | 0.917385 |
| Location | 8,545,523 – 8,545,624 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 81.72 |
| Mean single sequence MFE | -27.85 |
| Consensus MFE | -18.38 |
| Energy contribution | -18.35 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.02 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.917385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8545523 101 - 27905053 ----------GAGAGAGUCAGAGCUG---UUGUAGUAGUCGUGUGUGUAAAAAUCAUACGACCACAACGACAACCACACUCGAAUACGAACUUUCCAAUUUCGCAAAACUAACG ----------((((((((..(.(.((---((((.((.((((((((.........)))))))).)).)))))).))..))))(((........)))...))))............ ( -24.30) >DroVir_CAF1 9851 104 - 1 -------CCGCUGCUACUGCGAAAUG---GCGCAGUAGUCGUGUGUGUAAAAAUCAUACGACUACAACGAUAACAACGCUCGAAUACGAACUUUCCAAUUUUGCAAAACUCACA -------..........(((((((((---(((..(((((((((((.........)))))))))))..))..........(((....))).....)).))))))))......... ( -26.70) >DroGri_CAF1 12582 99 - 1 ---------GCUGCUACUGCGAAAUG---GCGCAGUAGUCGUGUGUGUAAAAAUCAUACGACUACAACGA---CAACGCUCGAAUAUGAACUUUCCAAUUUUGCAAAACUCAAA ---------........(((((((((---(....(((((((((((.........)))))))))))..(((---......)))............)).))))))))......... ( -26.50) >DroWil_CAF1 8288 111 - 1 UCGGCAGCGAUGUCGGCGCAAAAAUG---GCGCAGUAGUCGUGUGUAUAAAAAUCAUACGACUACAACGACAACAACACUCGAAUACGAACUUUCCAAUUUUGCAAAACUAACA ......(((((((((((((.......---)))).(((((((((((.........)))))))))))..))))).......(((....)))...........)))).......... ( -34.00) >DroMoj_CAF1 9940 104 - 1 -------CCGCUGCGACUGCGAAAUG---GCGCAGUAGUCGUGUGUGUAAAAAUCAUACGACUACAACGACAACAACACUCGAAUACGAACUUUCCAAUUUUGCAAAACUCACA -------..........(((((((((---(((..(((((((((((.........)))))))))))..))..........(((....))).....)).))))))))......... ( -26.70) >DroAna_CAF1 7069 103 - 1 ----------CACCGAG-CAUGGCUGCGAGUGUAGUAGUCGUGUGUGUAAAAAUCAUACGACUACAACCACAACUACACUCGAAUACGAACUUUCCAAUUUUGCAAAACUCACA ----------....(((-....((...((((((((((((((((((.........))))))))).........)))))))))(((........))).......))....)))... ( -28.90) >consensus _________GCUGCGACUCAGAAAUG___GCGCAGUAGUCGUGUGUGUAAAAAUCAUACGACUACAACGACAACAACACUCGAAUACGAACUUUCCAAUUUUGCAAAACUCACA ...............................((((((((((((((.........)))))))))))..............(((....)))............))).......... (-18.38 = -18.35 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:46 2006