Locus 3209

Sequence ID 3R_DroMel_CAF1
Location 8,540,329 – 8,540,449
Length 120
Max. P 0.500000
window5196

overview

Window 6

Location 8,540,329 – 8,540,449
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.61
Mean single sequence MFE -44.13
Consensus MFE -30.76
Energy contribution -30.93
Covariance contribution 0.17
Combinations/Pair 1.29
Mean z-score -1.43
Structure conservation index 0.70
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8540329 120 - 27905053
CUGGGCGCCAACGGAAUGGGUAUACCCGUGGGCAAACUGUCCCUGUAUACGGCCUUGGCGGGCAUUAAGCCAUCGCAGUGCCUGCCCAUCACCUUGGAUGUGGGCACCAAUACCGAAUCC
.((((((((((.((.(((((....)))))((((.....))))(((....))))))))))(((((((..((....)))))))))))))).......((((.(((.........))).)))) ( -44.60)
>DroVir_CAF1 4389 120 - 1
CUGGGCGCCAACGGCAUGGGCAUACCCGUGGGCAAGCUCUCGCUAUAUACGGCUCUGGCUGGCAUUAAGCCGCAUCAGUGCCUGCCCAUCACCUUGGACGUGGGCACCAACACACAGUCC
..(((((((((.((...(((....)))((((((((((....)))......(((.((((.((((.....))))..)))).))))))))))..)))))).)(((........)))...)))) ( -44.90)
>DroGri_CAF1 6800 120 - 1
CUAGGCGCCAAUGGCAUGGGCAUACCUGUGGGAAAACUAUCGCUAUACACGGCUCUGGCCGGCAUCAAGCCGCAUCAGUGUCUGCCCAUCACAUUGGAUGUGGGCACGAACACUCAGUCC
...(((.((((((..(((((((.((((((((.....)))..((.......(((....)))(((.....)))))..))).)).)))))))..))))))..(((........)))...))). ( -41.90)
>DroWil_CAF1 2317 120 - 1
CUCGGUGCCAAUGGCAUGGGCAUCCCUGUCGGCAAGCUGUCGCUGUACACAGCUCUGGCCGGCAUUAAGCCAAGCCAGUGUCUGCCCAUCACCCUGGAUGUUGGUACCAACACUCAAUCC
...((((((((.((((.(((...)))))))((((..(....((((....)))).(((((.(((.....)))..))))).)..))))((((......))))))))))))............ ( -47.10)
>DroMoj_CAF1 3955 120 - 1
CUCGGCGUCAAUGGCAUGGGCAUACCCGUGGGCAAGCUGUCGCUGUACACGGCACUCGCUGGCAUCAAGCCCAACCAGUGCCUGCCCAUCACCCUGGACGUGGGCACCAACACCGAGUCC
(((((((((...((.(((((((.....(((..((.((....))))..)))((((((.(..(((.....)))...).)))))))))))))...))..))))(((...)))...)))))... ( -47.00)
>DroAna_CAF1 1891 120 - 1
UUGGGAGCCAACGGCAUGGGUAUCCCCGUGGGCAAGCUCUCUCUGUACACCGCUCUGGCCGGUAUCAAGCCCUCCCAGUGCCUGCCCAUCACCCUGGACGUCGGCACCAAUACCGAAUCU
((((..(((.(((.((.((((......(((((((.((.......)).....((.((((..(((.....)))...)))).)).))))))).))))))..))).))).)))).......... ( -39.30)
>consensus
CUGGGCGCCAACGGCAUGGGCAUACCCGUGGGCAAGCUGUCGCUGUACACGGCUCUGGCCGGCAUCAAGCCAAACCAGUGCCUGCCCAUCACCCUGGACGUGGGCACCAACACCCAAUCC
...((.(((.(((....(((....)))((((((((((....)))......(((.((((..(((.....)))...)))).)))))))))).........))).))).))............ (-30.76 = -30.93 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:45 2006