| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,526,762 – 8,526,881 |
| Length | 119 |
| Max. P | 0.551689 |
| Location | 8,526,762 – 8,526,881 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.20 |
| Mean single sequence MFE | -26.35 |
| Consensus MFE | -16.58 |
| Energy contribution | -16.94 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551689 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8526762 119 - 27905053 AAUUAGUUACUGGCUUUCCAUAUAAGUUGCUUGCUCAGCAAGCAAUGAUCCCUAAAGCUGAAUAUAAUUACAAGUUUUACGGUGGACAACCUUUGAGCCCCUCAUAAUAUACAUA-UGCA .((((......(((((((((.....(((((((((...)))))))))...((.(((((((.............))))))).))))))........))))).....)))).......-.... ( -25.92) >DroSec_CAF1 2960 120 - 1 AAUUAGUUACUGGCUUUCCGUAUAAGUUGCUUGCUCAGCAAGCAAUUAUCCCUAAAGCUGAAUAUAAUAUAUAUAUAUAUGGUGGCCAACCUUUGAGCCACUCAUAAUAAACAUAAUGCA .(((((((...((((((..(.((((.((((((((...)))))))))))).)..))))))..................(((((((((((.....)).))))).))))...))).))))... ( -29.60) >DroSim_CAF1 3297 119 - 1 AAUUAGUUACUGGCUUUCCGUAUAAGUUGCUUGCUUAGCAAGCAAUUAUCCCUAAAGCUGAAUAUAAUAUGUAUAUAUAUGGUGGACAACCUUUGAGCCACUCAUAGCAUACAUA-UGGA ...........((((((..(.((((.((((((((...)))))))))))).)..)))))).......((((((((...((((((((.((.....))..)))).))))..)))))))-)... ( -31.50) >DroEre_CAF1 5275 115 - 1 AAUUAGUUAGUGGCUUUUUGUAUAAGUUGCUCGCACAACAAGCUAUGAUCCCCAAAGCUGAAUAUAAUUACAAGCUGUACGGUGGACAACCUUUGAGCCGCUCAUAAUAU----A-UACA .((((...((((((((...(((((.((((......)))).((((.((.....)).))))................)))))(((.....)))...))))))))..))))..----.-.... ( -25.90) >DroYak_CAF1 2955 114 - 1 AAUUAGUUACAGGCUU-UCGUAUAAGUUGCUCGCCCAACAAGCAAUGAUCCCCAAAGCUGAAUAUAAUUACAAACUGUACGGUGGAUAACCUUUGAGCCGCCCAUAAUAU----A-UGCA (((((......(((((-(.......((((((.(.....).)))))).......)))))).....)))))...........(((((............)))))........----.-.... ( -18.84) >consensus AAUUAGUUACUGGCUUUCCGUAUAAGUUGCUUGCUCAGCAAGCAAUGAUCCCUAAAGCUGAAUAUAAUUACAAGAUAUACGGUGGACAACCUUUGAGCCACUCAUAAUAUACAUA_UGCA .....((((..((((((........((((((((.....)))))))).......)))))).....................(((((............)))))..))))............ (-16.58 = -16.94 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:38 2006