| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,498,342 – 8,498,453 |
| Length | 111 |
| Max. P | 0.743696 |
| Location | 8,498,342 – 8,498,453 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.27 |
| Mean single sequence MFE | -37.35 |
| Consensus MFE | -25.94 |
| Energy contribution | -26.38 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.743696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8498342 111 + 27905053 UCGUUUAUAU------CCC---CCAGAUACGUGUCCUGUUCUGAGUGCAGCUAUGACUCCGAGUCCUGCGCCUGCGCCUCCGCCGAUCGCUGCUACUGCAGCCUACGAACGGAGCACCUG .......(((------(..---...)))).(((..((((((.((((((((....(((.....)))))))))(.(((....))).).))(((((....)))))....))))))..)))... ( -33.90) >DroVir_CAF1 17035 109 + 1 ---UUCAAAU--G---CCA---ACAGCUACGUCUCGUGCUCUGAGUGCAGCUACGACUCCGAAUCCUGCACCUGCGCCUCAGCCGAUCGCUGCUAUUGCAGCCUGCGCACGGAGCAUCUG ---.......--.---...---.............((((((((.((((((...((....))....)))))).(((((.((....))..(((((....)))))..)))))))))))))... ( -34.90) >DroGri_CAF1 17989 112 + 1 UACAUCAAAU--C---GAA---AUAGGUAUGUCUCUUGUUCCGAGUGCAGCUAUGACUCGGAAUCCUGCACGUGUGCCUCCGCUGAUCGCUGCUACUGCAGCCUGCGCACGGAGCAUCUC .....((.((--(---...---...))).)).....(((((((.((((((....((.((((......(((....))).....))))))(((((....))))))))))).))))))).... ( -36.80) >DroWil_CAF1 6739 107 + 1 ----GAAUUC------UCC---GUAGAUAUGUGUCUUGCUCGGAGUGCAGCUACGACUCCGAGUCCUGCACUUGUGCCUCGGCCGAUCGCUGCUAUUGCAGCCUGCGCACCGAGCACUUG ----......------...---..((((....))))(((((((.((((((...((...(((((....(((....)))))))).))...(((((....))))))))))).))))))).... ( -41.50) >DroMoj_CAF1 14955 112 + 1 ---UUCCUAU--U---CCAUUUAUAGCUACGUCUCCUGCUCGGAGUGCAGUUACGAUUCGGAAUCGUGCACCUGCACCUCGGCAGAUCGCUGCUAUUGCAGUCUGCGCACGGAGCAUCUG ---...((((--.---......))))....(.(((((((.((..((((((.((((((.....))))))...))))))..))((((...(((((....)))))))))))).)))))..... ( -39.90) >DroAna_CAF1 6712 116 + 1 U-GAUCAGCUUCUCCACUU---UCAGCUAUGUAUCCUGCUCGGAGUGCAGCUAUGACUCGGAGUCCUGCGCCUGUGCCUCGGCGGAUCGGUGCUACUGCAGCCUGCGGACGGAGCACAUG .-.....((((((((((((---..(((..........)))..))))((((((..(((.....)))..((((((.(((....))).)..)))))......)).))))))).)))))..... ( -37.10) >consensus ___UUCAUAU______CCA___ACAGCUACGUCUCCUGCUCGGAGUGCAGCUACGACUCCGAAUCCUGCACCUGCGCCUCGGCCGAUCGCUGCUACUGCAGCCUGCGCACGGAGCACCUG ....................................(((((((.((((((....(((.....))))))))).(((((.((....))..(((((....)))))..)))))))))))).... (-25.94 = -26.38 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:36 2006