| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,494,641 – 8,494,743 |
| Length | 102 |
| Max. P | 0.660224 |
| Location | 8,494,641 – 8,494,743 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.82 |
| Mean single sequence MFE | -27.97 |
| Consensus MFE | -23.73 |
| Energy contribution | -23.15 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660224 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8494641 102 + 27905053 CUGGACGGCGACCAGCUCGAAAACAAUUCGAGUGUCAGCCGCAACUCGAUCUACAAACUGAAGAUCGAUCUCAUGUUUGACGAUUCCAGGUGAGUU------------ACGG----AU-- ((((((((((((..(((((((.....)))))))))).))))....(((((((.(.....).)))))))(((((....))).)).))))).......------------....----..-- ( -32.90) >DroGri_CAF1 10799 108 + 1 CUGGACGGCGAUCAGCUCGAAAACAAUUCGAGUGUCAGUCGAAAUUCGAUAUACAAACUUAAGAUCGAUCUAAUGUUUGACGAUUCCAGGUGAGUG------------CGAGUCGAAAGU .....(((((((..(((((((.....)))))))))).))))...((((((.(((..((((..(((((.((........)))))))..))))..)))------------...))))))... ( -29.20) >DroSim_CAF1 79 102 + 1 CUGGACAGCGACCAGCUCGAAAAUAAUUCCAGUGUCCCCCGCAACUCGAUCUACAAACUGAAGAUCGAUCUCAUGUUUGACGAUUCCAGGUGAGUU------------ACAG----AU-- (((....(((....(((.(((.....))).)))......)))((((((((((.(.....).)))))(((((((....))).))))......)))))------------.)))----..-- ( -21.90) >DroWil_CAF1 374 100 + 1 UUGGAUGGCGAUCAGCUUGAAAACAAUUCAAGUGUCAGUCGAAAUUCGAUAUACAAACUCAAGAUCGAUCUGAUGUUUGAUGAUUCCAGGUGAGUU------------CUAA-------- ((((((..((((..(((((((.....)))))))....))))..))))))......((((((.((((.(((........))))))).....))))))------------....-------- ( -23.80) >DroMoj_CAF1 9844 104 + 1 CUGGACGGCGAUCAGCUCGAGAACAACUCGAGUGUCAGUCGAAACUCGAUAUACAAACUCAAAAUCGAUCUAAUGUUUGACGAUUCCAGGUGAGUG------------CCCA----AGGC ......((((((..(((((((.....)))))))))).((((.....))))......(((((.(((((.((........))))))).....))))))------------))..----.... ( -28.10) >DroAna_CAF1 3040 114 + 1 CUGGACGGCGAUCAGCUCGAAAAUAAUUCGAGUGUCAGCCGCAACUCGAUCUACAAACUCAAGAUAGAUCUUAUGUUUGACGAUUCCAGGUGAGUUUACUUUUACAAUACAG----AU-- ((((((((((((..(((((((.....)))))))))).))))............(((((..((((....))))..))))).....)))))(((((......))))).......----..-- ( -31.90) >consensus CUGGACGGCGAUCAGCUCGAAAACAAUUCGAGUGUCAGCCGAAACUCGAUAUACAAACUCAAGAUCGAUCUAAUGUUUGACGAUUCCAGGUGAGUU____________ACAG____AU__ ((((((((((((..(((((((.....)))))))))).))))............(((((...(((....)))...))))).....)))))............................... (-23.73 = -23.15 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:33 2006