| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,241,691 – 1,241,781 |
| Length | 90 |
| Max. P | 0.977923 |
| Location | 1,241,691 – 1,241,781 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 70.21 |
| Mean single sequence MFE | -32.27 |
| Consensus MFE | -12.92 |
| Energy contribution | -12.90 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.40 |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.977923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1241691 90 + 27905053 CAGUGCAC----CUUG-UUCCCUCAGGUGGCAACUAGG----ACUGCUGCUCUAAGCAGCGCCAUUUGGAGUCG-GAGGCUGCAUGGCCUU-CCCAUU---UCA ..(.((.(----((.(-((.((......)).))).)))----...(((((.....))))))))...((((((.(-((((((....)))).)-)).)))---))) ( -32.20) >DroSec_CAF1 15502 77 + 1 CAGUGCAC----CUUG-UUCCCUCAGGU-----------------GCCGUUCUAGGCAGUGCCAUUUGGAGUCG-GAAGCUGCAUGGCUUU-CCCAUU---UCA ..(.((((----((((-......))))(-----------------(((......)))))))))...((((((.(-((((((....))).))-)).)))---))) ( -24.40) >DroSim_CAF1 15801 90 + 1 CAGUGCAC----CUUG-UUCCCUCAGGUGGGAAGUGGG----ACUGCUGCUCUAGGCAGCGCCAUUUGGAGUCG-GAAGCUGCAUGGCUUU-CCCAUU---UCA .....(((----((.(-......)))))).((((((((----(..(((((.....)))))((((..((.((.(.-...))).))))))..)-))))))---)). ( -39.10) >DroEre_CAF1 15990 90 + 1 CAGUGCAC----CCGA-UUCCCGCAGGUGGCAAGUGGC----ACUGCUGCUCUAAGCAGCGUCACUUGGAGUCG-GAAGCUGCAUGGCUUU-CCCAUU---UCA ((((....----((((-((((.((.....))(((((((----.(((((......))))).))))))))))))))-)..)))).((((....-.)))).---... ( -37.10) >DroYak_CAF1 22139 91 + 1 CAU---GA----CUAA-UUUCCGCAGGUGGCUACUUGCCAGGCCUGCUGCUCUAAGCAGCGUCAUUUGGAGUCG-GAAGUUGCAUGGCUUU-CCCAUU---UUA (((---(.----(.((-((((((((((((((.....)))..)))))).((((((((........)))))))).)-))))))))))).....-......---... ( -32.00) >DroPer_CAF1 16925 91 + 1 UACUUUGACCAACUUGCUGGCCCCAGGUGGCAAGUUGG----UCAGCCAC---------UUCCAUUUGCAGUCGGGAAAGUGCACGAUUUUACCCAUUUUUUCC ....(((((((((((((((.(....).)))))))))))----))))....---------..............((((((((.....))))).)))......... ( -28.80) >consensus CAGUGCAC____CUUG_UUCCCUCAGGUGGCAAGUGGG____ACUGCUGCUCUAAGCAGCGCCAUUUGGAGUCG_GAAGCUGCAUGGCUUU_CCCAUU___UCA .......................(((((((..............((((((.....))))))))))))).....(.((((((....)))))).)........... (-12.92 = -12.90 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:22 2006