| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,493,557 – 8,493,655 |
| Length | 98 |
| Max. P | 0.538021 |
| Location | 8,493,557 – 8,493,655 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 89.44 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -24.64 |
| Energy contribution | -24.48 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.538021 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8493557 98 - 27905053 CCGAAGCCGGGCUAAAUCCGUCCGAGUUCGUUGAAUGCCACACGGCGACUAAAACGGGCUCAAAACGUCGAAGUUGUUGGCCAUAAGAUAAAAGCAAA---- .....(((((((.......))))(((((((((...((((....)))).....))))))))).................))).................---- ( -26.50) >DroSec_CAF1 29181 102 - 1 CCGAAGCCGGGCUAAAUCCGUCCGAGUUCGUUGAAUGCCACACGGCGACUAAAACGGGCUCAAAACGUCGAAGUUGUUGGCCAUAAGCUGAAAGCAAAAGAG .(((....((((.......))))(((((((((...((((....)))).....)))))))))......)))..(((.(..((.....))..).)))....... ( -29.40) >DroSim_CAF1 30694 102 - 1 CCGAAGCCGGGCUAAAUCCGUCCGAGUUCGUUGAAUGCCACACGGCGACUAAAACGGGCUCAAAACGUCGAAGUUGUUGGCCAUAAGCUAAAAGCAAAAGAG .(((....((((.......))))(((((((((...((((....)))).....)))))))))......)))..(((.(((((.....))))).)))....... ( -29.90) >DroEre_CAF1 28215 95 - 1 CCGAAACCGGGCUAAGUCCGUCCGAGUUCGUUGAAUGCCACACGGCGACUAAAACGGGCUCAAAACGUCGAAGUAGUUGGCUAAAAG-------CUAAAGAG .(((...(((((...)))))...(((((((((...((((....)))).....)))))))))......)))......(((((.....)-------)))).... ( -27.90) >DroYak_CAF1 29598 94 - 1 CCGAAACCGGACUAAGUCCGUCCGAGUUCGUUGAAUGCCACACGGCGACUAAAACGGGCUCAAAACGUCGAAGCAGUUGGCUAAAAG-------C-AAAGAG .(((...(((((...)))))...(((((((((...((((....)))).....)))))))))......))).(((.....))).....-------.-...... ( -26.30) >consensus CCGAAGCCGGGCUAAAUCCGUCCGAGUUCGUUGAAUGCCACACGGCGACUAAAACGGGCUCAAAACGUCGAAGUUGUUGGCCAUAAG_U_AAAGCAAAAGAG ........((((.......))))(((((((((...((((....)))).....))))))))).....(((((.....)))))..................... (-24.64 = -24.48 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:31 2006