Locus 3198

Sequence ID 3R_DroMel_CAF1
Location 8,492,879 – 8,492,976
Length 97
Max. P 0.781231
window5181

overview

Window 1

Location 8,492,879 – 8,492,976
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 98.14
Mean single sequence MFE -27.08
Consensus MFE -26.08
Energy contribution -26.08
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.96
SVM decision value 0.56
SVM RNA-class probability 0.781231
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8492879 97 + 27905053
AAUUACCAACUGCGCCCAGGCGAUUUCAGCUCGGCACAAAGUGAAAAAUUAAAUGCAUUUUACGAUGGAGCGAAAGAGGCCGCGGGCAGCUCCAAUU
...........((((((.(((..((((.((((.((..((((((............))))))..).).))))))))...)))..)))).))....... ( -25.90)
>DroSec_CAF1 28503 97 + 1
AAUUUCCAACUGCGCCCAGGCGAUUUCAGCUCGGCACAGAGUGAAAAAUUAAAUGCAUUUUACGAUGGAGCGAAAGAGGCCGCGGGCAGCUCCAAUU
...........((((((.(((..((((.((((....((..((((((...........))))))..))))))))))...)))..)))).))....... ( -26.80)
>DroSim_CAF1 29994 97 + 1
AAUUUCCAACUGCGCCCAGGCGAUUUCAGCUCGGCACAGAGUGAAAAAUUAAAUGCAUUUUACGAUGGAGCGAAAGAGGCCGCGGGCAGCUCCAAUU
...........((((((.(((..((((.((((....((..((((((...........))))))..))))))))))...)))..)))).))....... ( -26.80)
>DroEre_CAF1 27546 97 + 1
AAUUUCCAACUGCGCCCAGGCGAUUUCAGCUCGGCACAAAGUGAAAAAUUAAAUGCAUUUUACGAUGGAGCGAAAGAGGCCGCGGGCAGCUCCAAUU
...........((((((.(((..((((.((((.((..((((((............))))))..).).))))))))...)))..)))).))....... ( -25.90)
>DroYak_CAF1 28911 97 + 1
AAUUUCCAACUGCGCCCAGGCGAUUUCAGCUCCACACAAAGUGAAAAAUUAAAUGCAUUUUACGAUGGAGCGAAAGAGGCCGCGGGCAGCUCCAAUU
...........((((((.(((..((((.(((((((..((((((............))))))..).))))))))))...)))..)))).))....... ( -30.00)
>consensus
AAUUUCCAACUGCGCCCAGGCGAUUUCAGCUCGGCACAAAGUGAAAAAUUAAAUGCAUUUUACGAUGGAGCGAAAGAGGCCGCGGGCAGCUCCAAUU
...........((((((.(((..((((.((((....((..((((((...........))))))..))))))))))...)))..)))).))....... (-26.08 = -26.08 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:30 2006