Locus 3197

Sequence ID 3R_DroMel_CAF1
Location 8,488,346 – 8,488,439
Length 93
Max. P 0.773058
window5180

overview

Window 0

Location 8,488,346 – 8,488,439
Length 93
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 81.79
Mean single sequence MFE -30.41
Consensus MFE -18.02
Energy contribution -19.08
Covariance contribution 1.06
Combinations/Pair 1.18
Mean z-score -2.49
Structure conservation index 0.59
SVM decision value 0.53
SVM RNA-class probability 0.773058
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8488346 93 + 27905053
GGCUAAUCCACUGCUGCCGCCAGUCGUCAGAUGUCAGCACUUUUGUUUGGCCAACUGCACGCACGCGCAGAGGCCAAAACA-AAACUGGCCACU
(((((......(((((......(((....)))..))))).((((((((((((..((((.(....).)))).)))).)))))-))).)))))... ( -32.70)
>DroSec_CAF1 24066 93 + 1
GGCUAAUCCACUGCUGCCGUCAGUCGUCAGAUGUCAGCACUUUUGUUUGGCCAACGGCACGCAUGCGCAGAGGCCAAAACA-AAACUGGCCACU
(((((......(((((.((((........)))).))))).((((((((((((....((........))...)))).)))))-))).)))))... ( -32.70)
>DroSim_CAF1 25478 93 + 1
GGCUAAUCCACUGCUGCCGUCAGUCGUCAGAUGUCAGCACUUUUGUUUGGCCAACUGCACGCAUGCGCAGAGGCCAAAACA-AAACUGGCCACU
(((((......(((((.((((........)))).))))).((((((((((((..((((........)))).)))).)))))-))).)))))... ( -36.00)
>DroEre_CAF1 22756 93 + 1
GGCUAAUCCACUGCUGCCGUCAGUCGUCAGAUGUCAGCACUUUUGUUUGGCCAACAUCACGCAUGCGCAAGAGCCAAAACA-AAACUGGCCACU
(((((......(((((.((((........)))).))))).(((((((((((...(((.....)))(....).))).)))))-))).)))))... ( -27.60)
>DroYak_CAF1 24131 93 + 1
GGCUAAUCCACUGCUGCCGUCAGUCGUCAGAUGUCAGCACUUUUGUUUGGCCAACUGCACGCAUGCGCAAGAGCCAAAACA-AAACUGGCCACU
(((((......(((((.((((........)))).))))).((((((((((((...((((....))))...).))).)))))-))).)))))... ( -29.90)
>DroAna_CAF1 32936 73 + 1
GGCUAAUCCACUUCAGUCGC----CGUCAACUGGCCACGCAUCUGGCUGU-----------------UUGUGGCUGGAACAAAAACUGGCCACU
(((((......(((((((((----....(((.(((((......)))))))-----------------).)))))))))........)))))... ( -23.54)
>consensus
GGCUAAUCCACUGCUGCCGUCAGUCGUCAGAUGUCAGCACUUUUGUUUGGCCAACUGCACGCAUGCGCAGAGGCCAAAACA_AAACUGGCCACU
(((((......(((((.((((........)))).)))))......((((((.....((......))......))))))........)))))... (-18.02 = -19.08 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:29 2006