Locus 3195

Sequence ID 3R_DroMel_CAF1
Location 8,483,846 – 8,483,943
Length 97
Max. P 0.563490
window5178

overview

Window 8

Location 8,483,846 – 8,483,943
Length 97
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 83.68
Mean single sequence MFE -35.45
Consensus MFE -27.34
Energy contribution -27.70
Covariance contribution 0.36
Combinations/Pair 1.14
Mean z-score -1.60
Structure conservation index 0.77
SVM decision value 0.06
SVM RNA-class probability 0.563490
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8483846 97 + 27905053
G--------AUUGUUUGCAGUCGUGGGCUUUGUGGCUGCGGAAAAGCCGACUGGCUAUCAUCGCGAGAUUUGCCAAUACCGCAAGGGCAAACAUGUGAGUUGUGC
.--------..(((((((....((.((((((.((....))..)))))).))((((....(((....)))..))))...((....)))))))))............ ( -32.30)
>DroVir_CAF1 31348 105 + 1
AAUAGUUUUGUGCGUUGCCGUUGCCGUUGCCGUUGCCGCAGAGAUGCCCGGCGGCUAUCGUCGCGAGAUUUGCCAGUACCGCAAGGGCAGACAGGUGCGUAAUGG
..........(((((.(((.(((((.((((.((.((((((....)))..)))(((....(((....)))..)))...)).)))).)))))...)))))))).... ( -38.40)
>DroSec_CAF1 19499 97 + 1
G--------AUUGUUUGCAGUCGUGAGCUUUGUGGCUGCGGAAAAGCCGACUGGCUAUCAUCGCGAGAUUUGCCAGUACCGCAAGGGCAAACAUGUGAGUUGUGG
.--------..(((((((...(....)((((((((...(((.....)))((((((....(((....)))..)))))).)))))))))))))))............ ( -35.80)
>DroSim_CAF1 20967 97 + 1
G--------AUUGUUUGCAGUCGUGGGCUUUGUGGCUGCGGAAAAGCCGACUGGCUAUCAUCGCGAGAUUUGCCAGUACCGCAAGGGCAAACAUGUGAGUUGUGG
.--------..(((((((....((((......(((((.......)))))((((((....(((....)))..)))))).))))....)))))))............ ( -34.60)
>DroEre_CAF1 17894 97 + 1
G--------UUUUUUUGCAGUCGUGGGCUUUGUGGCUGCGGAGAAGCCGAAAGGCUAUCAUCGCGAGAUUUGCCAGUACCGCAAGGGCAAACAUGUGAGUUUUGG
.--------..((((((((((((..(...)..))))))))))))((((....)))).......(((((((..(..((.((....))....))..)..))))))). ( -36.10)
>DroYak_CAF1 19441 97 + 1
G--------UUUGUUUGCAGUCGUGGGCUCUGUGGCUGCGGAAAAGCCGAAAGGCUAUCAUCGCGAGAUUUGCCAGUACCGCAAGGGCAAACAUGUGAGUUUCUG
(--------(((((..(((((((..(...)..)))))))((...((((....))))...(((....)))...))....((....))))))))............. ( -35.50)
>consensus
G________AUUGUUUGCAGUCGUGGGCUUUGUGGCUGCGGAAAAGCCGACUGGCUAUCAUCGCGAGAUUUGCCAGUACCGCAAGGGCAAACAUGUGAGUUGUGG
.............((((((((((..(...)..))))))))))..((((....))))....(((((.(.((((((.....(....)))))))).)))))....... (-27.34 = -27.70 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:27 2006