Locus 3192

Sequence ID 3R_DroMel_CAF1
Location 8,476,048 – 8,476,140
Length 92
Max. P 0.992990
window5175

overview

Window 5

Location 8,476,048 – 8,476,140
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 96.85
Mean single sequence MFE -22.36
Consensus MFE -22.04
Energy contribution -22.24
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.99
SVM decision value 2.37
SVM RNA-class probability 0.992990
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8476048 92 - 27905053
UUAAGUUUACAUCGAUGACUAGGCUCGGCUUUCUCCCAAGAAACUGAGAACACGUCGCAAGUACUUAACCAGAAAUGGAAAUAGGCUUGGAA
(((((((((...(((((......(((((.(((((....))))))))))....)))))...........(((....)))...))))))))).. ( -22.90)
>DroSec_CAF1 11782 92 - 1
UUAAGUUUACAUCGAUGACUAGGCUCGGCUUUCUCUCAAGAAACUGAGAACACGUCGCAAGUACUUAACCAGAAAUGGAAAUAGGCUUGGAA
(((((((((...(((((......(((((.(((((....))))))))))....)))))...........(((....)))...))))))))).. ( -22.90)
>DroSim_CAF1 13190 92 - 1
UUAAGUUUACAUCGAUGACUAGGCUCGGCUUUCUCCAAAGAAACUGAGAACACGUCGCAAGUACUUAACCAGAAAUGGAAAUAGGCUUGGAA
(((((((((...(((((......(((((.(((((....))))))))))....)))))...........(((....)))...))))))))).. ( -22.90)
>DroEre_CAF1 10230 92 - 1
UUAAAUAUACAUCGAUUACUAGGCUCGGCUUUCUCUUAAGAAACUGAGAACACGUCGCAAGUACUUAACCAGAAAUGGAAAUAGGCUUGGAA
............((((.......(((((.(((((....)))))))))).....))))(((((......(((....)))......)))))... ( -20.40)
>DroYak_CAF1 10275 92 - 1
UUAAAUUUACAUCGAUGACUAGGCUCGGCUUUCUCCGAAGAAACUGAGAACACGUCGCAAGUACUUAACCAGAAAUGGAAAUAGGCUUGGAA
............(((((......(((((.(((((....))))))))))....)))))(((((......(((....)))......)))))... ( -22.70)
>consensus
UUAAGUUUACAUCGAUGACUAGGCUCGGCUUUCUCCCAAGAAACUGAGAACACGUCGCAAGUACUUAACCAGAAAUGGAAAUAGGCUUGGAA
............(((((......(((((.(((((....))))))))))....)))))(((((......(((....)))......)))))... (-22.04 = -22.24 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:24 2006