| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,459,028 – 8,459,148 |
| Length | 120 |
| Max. P | 0.989130 |
| Location | 8,459,028 – 8,459,148 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.17 |
| Mean single sequence MFE | -24.74 |
| Consensus MFE | -23.66 |
| Energy contribution | -23.30 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.96 |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.989130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8459028 120 - 27905053 CUUACAGAAGUUAUUCCAUUGACUAUUUGAGUACAGACACUCAGAAUGACAAGCGUUUUAUACGGCAUUUCGAGUAAGAGUAACUUGCACAAGUCAAAAUAAUUCUGACCCAACUUUUAA ....(((((.(((((...((((((.(((((((......))))))).((.((((..((((((.(((....))).))))))....))))))..))))))))))))))))............. ( -24.50) >DroSec_CAF1 4928 120 - 1 CUUACAGAAGUUAUUCCAUUGACUAUGUGAGUACAGACACUCAGAAUGACAAGCGUUUUAUACGGCAUUGCGAGUAAGAGUAACUUGCUCAAGUCAAAAUAAUUCUGACCCAACUUUUAA ((((((..(((((......))))).)))))).........((((((((((...(((.....))).......(((((((.....)))))))..))))......))))))............ ( -27.50) >DroSim_CAF1 4986 120 - 1 CUUACAGAAGUUAUUCCAUUGACUAUUUGAGUACAGACACUCAGAAUGACAAGCGUUUUAUACGGCAUUGCGAGUAAGAGUAACUUGCUCAAGUCAAAAUGAUUCUGACCCAACUUUUAA ....(((((.(((((...((((((.(((((((......)))))))..(.(((((((.....)).)).))))(((((((.....))))))).))))))))))))))))............. ( -28.40) >DroEre_CAF1 5087 120 - 1 CUUACAGACGUUAUUCCAUUGACUAUUUGAAUACAGGCACUCAAGAUGACAAUCGGCUUAUACGCCAUUUCAAGUAAGAGUAACUUACUGAAGUCAAAAUAUUGCUGACCCAACAUUUAA ....(((.((.((((...((((((...((((.............(((....)))(((......)))..))))((((((.....))))))..)))))))))).)))))............. ( -21.90) >DroYak_CAF1 5044 120 - 1 CUUACAGACGUUAUUCCAUUGACUAUUUGAAUACAGACACUCAAAAUGACAAUCGGUUUAUACGCCAUUUCGAGUAAGAGUAACUUGCUCAAGUCAAAAUAUUGCUGACCCAACUUUUAA ....(((.((.((((...((((.(.((((....)))).).))))..((((....(((......))).....(((((((.....)))))))..)))).)))).)))))............. ( -21.40) >consensus CUUACAGAAGUUAUUCCAUUGACUAUUUGAGUACAGACACUCAGAAUGACAAGCGUUUUAUACGGCAUUUCGAGUAAGAGUAACUUGCUCAAGUCAAAAUAAUUCUGACCCAACUUUUAA ....(((.(((((((...((((((.(((((((......))))))).........(((......))).....(((((((.....))))))).))))))))))))))))............. (-23.66 = -23.30 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:10 2006