Locus 3182

Sequence ID 3R_DroMel_CAF1
Location 8,454,934 – 8,455,033
Length 99
Max. P 0.836727
window5154

overview

Window 4

Location 8,454,934 – 8,455,033
Length 99
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 82.35
Mean single sequence MFE -36.70
Consensus MFE -28.36
Energy contribution -28.67
Covariance contribution 0.31
Combinations/Pair 1.19
Mean z-score -2.12
Structure conservation index 0.77
SVM decision value 0.74
SVM RNA-class probability 0.836727
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8454934 99 - 27905053
CUCGAUGAAGCUUUCGUCAAAGAUGCCCUCGUCGCCGCGGAAGGGCAUCUGCCGCUUCCAUGCCUUUCCUGGGAGUGGUGGCACCACAAUCUGC--GGGGA---------
..((((((.((..((......)).))..))))))(((((((..((...(..(((((((((.........)))))))))..)..))....)))))--))...--------- ( -39.30)
>DroVir_CAF1 905 99 - 1
CUCGAUGAAGUUCUCGUCAAAGAGACCCUCAUCGCCGCGGAAUGGCAUCUGUCGCUUCCAGGCCUUGCCCGGCAAUGGCGGCACCACAAUCUGC--AAAAA---------
..((((((.(.((((......)))).).))))))..(((((.((.....(((((((.((.(((...))).))....)))))))...)).)))))--.....--------- ( -35.80)
>DroPse_CAF1 656 95 - 1
CUCGAUGAAGCUCUCGUCGAAGAUGCCCUCGUCGCCGCGGAAUGGCAUCUGCCUCUUCCAGGCUUUCCCCGGCAGCGGCGGCACCACAAUCUUA--A-------------
.(((((((.....)))))))((((......((((((((((((.(((....)))..))))..(((......))).))))))))......))))..--.------------- ( -38.00)
>DroGri_CAF1 1034 110 - 1
CUCGAUGAAGUUCUCGUCGAAGAGGCCCUCGUCGCCGCGGAACGGCAUCUGUCGCUUCCAGGCCUUGCCAGGCAGUGGCGGCACCACAAUCUAAACAACAAUUAGUGUAA
.(((((((.....))))))).(((...)))((((((((((((((((....)))).))))..((((....)))).))))))))...(((..((((.......))))))).. ( -39.50)
>DroAna_CAF1 901 96 - 1
CUCAAUGAAACUCUCGUCAAAGAUGCCCUCGUCGCCCCGGAAUGGCAUCUGCCGUUUCCAGGCCUUUCCGGGUAGUGGCGGCACCACAAUCUGA--A---A---------
.(((((((.....))))....(.((((...((((((((((((.(((..(((.......)))))).)))))))..))))))))).)......)))--.---.--------- ( -29.60)
>DroPer_CAF1 650 95 - 1
CUCGAUGAAGCUCUCGUCGAAGAUGCCCUCGUCGCCGCGGAAUGGCAUCUGCCUCUUCCAGGCUUUCCCCGGCAGCGGCGGCACCACAAUCUUA--A-------------
.(((((((.....)))))))((((......((((((((((((.(((....)))..))))..(((......))).))))))))......))))..--.------------- ( -38.00)
>consensus
CUCGAUGAAGCUCUCGUCAAAGAUGCCCUCGUCGCCGCGGAAUGGCAUCUGCCGCUUCCAGGCCUUCCCCGGCAGUGGCGGCACCACAAUCUGA__A___A_________
...(((((.....)))))..((((......(((((((((((..(((....)))...)))..(((......))).))))))))......)))).................. (-28.36 = -28.67 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:03 2006