| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,443,214 – 8,443,317 |
| Length | 103 |
| Max. P | 0.921751 |
| Location | 8,443,214 – 8,443,317 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 94.92 |
| Mean single sequence MFE | -19.80 |
| Consensus MFE | -18.25 |
| Energy contribution | -18.03 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.921751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8443214 103 + 27905053 UUCGGUAGUUGGGCGGUUGGUUGGUAAAAUAAAAUAAGGCGCAAAGACAAAGCGAAAGCAAAAAUAUAAAUAACAGAAGGAAACA--AAAAAAAGGUCUGGCCCG ..........((((..((((((..((........)).))).)))((((...((....))...................(....).--........)))).)))). ( -19.80) >DroSec_CAF1 104105 105 + 1 UUGGGUAGUUGGGCGGUCGGUUGGUAAAAUAAAAUAAAGCGCAAAGACAAAGCGAAAGCAAAAAUAUAAAUAACAGAAGGAAACAGAAAAAAAAGGUCUGGCCUG ..((((..(((.((......(((......)))......)).)))((((...((....))...................(....)...........)))).)))). ( -20.00) >DroSim_CAF1 106099 105 + 1 UUGGGUAGUUGGGCGGUCGGUUGUUACAAUAAAAUAAGGCGCAAAGACAAAGCGAAAGCAAAAAUAUAAAUAACAGAAGGAAACAGAAAAAAAAGGUCUGGCCUG ..((((......(((.(..(((..........)))..).)))..((((...((....))...................(....)...........)))).)))). ( -19.60) >consensus UUGGGUAGUUGGGCGGUCGGUUGGUAAAAUAAAAUAAGGCGCAAAGACAAAGCGAAAGCAAAAAUAUAAAUAACAGAAGGAAACAGAAAAAAAAGGUCUGGCCUG ...(((......(((.(..(((..........)))..).)))..((((...((....))...................(....)...........)))).))).. (-18.25 = -18.03 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:58 2006