Locus 3177

Sequence ID 3R_DroMel_CAF1
Location 8,441,680 – 8,441,777
Length 97
Max. P 0.539212
window5147

overview

Window 7

Location 8,441,680 – 8,441,777
Length 97
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 80.89
Mean single sequence MFE -31.80
Consensus MFE -17.77
Energy contribution -18.05
Covariance contribution 0.28
Combinations/Pair 1.26
Mean z-score -1.93
Structure conservation index 0.56
SVM decision value 0.01
SVM RNA-class probability 0.539212
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8441680 97 + 27905053
UCCGCAGGAUGUGCGCAAUGUCAAAAGCAAGGUUUUAUAAAUG-GCCCGAGGGCCAGGAGCGGACCGCCAAAGUCAGCUG-CAGCAUCCUGGCAUCCUU
...(((((((((..(((.((.(....((..(((((......((-(((....))))).....)))))))....).))..))-).))))))).))...... ( -33.60)
>DroPse_CAF1 104426 91 + 1
UCCGCAGGAUGUGCGCAAUGUCAAAAGCAACGUUUGAUAAAUGGGCCCCAGGGCCAGGAGCGAACCACCAAAGUCAGCUCCCAGCGUCCUG--------
....((((((((......(((((((.......)))))))..((((((....)))).(((((..((.......))..)))))))))))))))-------- ( -32.60)
>DroGri_CAF1 113430 81 + 1
UCCGCAGGAUGUGCGCAAUGUCAAAAGCAACAUUUGAUAAAUG-GUCCACGGGCGUGGUGCG-ACCAGCAAAGCUUGC----AAAAU------------
...(((((...(((....(((((((.......)))))))..((-((((((.......))).)-)))))))...)))))----.....------------ ( -26.30)
>DroSec_CAF1 102638 97 + 1
UCCGCAGGAUGUGCGCAAUGUCAAAAGCAAGGUUUGAUAAAUG-GCCCGAGGGCCAGGAGCGGACCACCAAAGUCAGCUG-CAGCAUCCUGGCAUCCUU
...(((((((((((((..(((.....))).((((((.....((-(((....)))))....))))))..........)).)-)).)))))).))...... ( -36.30)
>DroAna_CAF1 107453 92 + 1
UCCGCAGGAUGUGCGCAAUGUCAAAAGCAAGGUUUGAUAUAUG-GCCCUCGGGUCAGGAGCGAACCGCCAAAGUCGGUUU-UAGUAUCCUGGAU-----
....(((((((..(((.((((((((.......)))))))).((-(((....)))))...)))((((((....).))))).-...)))))))...----- ( -29.40)
>DroPer_CAF1 106302 91 + 1
UCCGCAGGAUGUGCGCAAUGUCAAAAGCAACGUUUGAUAAAUGGGCCCCAGGGCCAGGAGCGAACCACCAAAGUCAGCUCCCAGCGUCCUG--------
....((((((((......(((((((.......)))))))..((((((....)))).(((((..((.......))..)))))))))))))))-------- ( -32.60)
>consensus
UCCGCAGGAUGUGCGCAAUGUCAAAAGCAACGUUUGAUAAAUG_GCCCCAGGGCCAGGAGCGAACCACCAAAGUCAGCUC_CAGCAUCCUG________
....((((((((.(((..(((((((.......))))))).....(((....))).....))).........((....))....))))))))........ (-17.77 = -18.05 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:57 2006