Locus 3175

Sequence ID 3R_DroMel_CAF1
Location 8,424,545 – 8,424,642
Length 97
Max. P 0.997110
window5144

overview

Window 4

Location 8,424,545 – 8,424,642
Length 97
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 89.28
Mean single sequence MFE -23.75
Consensus MFE -20.96
Energy contribution -21.68
Covariance contribution 0.72
Combinations/Pair 1.05
Mean z-score -3.27
Structure conservation index 0.88
SVM decision value 2.80
SVM RNA-class probability 0.997110
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8424545 97 + 27905053
UAUACACACAAACAUUUGCACAGUUCAAUGCACAAUUGAUGGCAACAAAGCGCAAAUGGAAGCGGGGCUCCUAGAGCUCCACCACCAACAAUAUCCA
............(((((((.(...(((((.....)))))((....))..).))))))).....(((((((...)))))))................. ( -25.70)
>DroSec_CAF1 85741 97 + 1
UAUACACACAAACAUUUGCACAGUUCAAUGCACAAUUGAUGGCAACAAAGCGCAAAUGGAAGCGGGGCUCCUAGAGCUCCACCACCAACAAUAUCCA
............(((((((.(...(((((.....)))))((....))..).))))))).....(((((((...)))))))................. ( -25.70)
>DroSim_CAF1 87419 97 + 1
UAUACACACAAACAUUUGCACAGUUCAAUGCACAAUUGAUGGCAACAAAGCGCAAAUGGAAGCGGGGCUCCUAGAGCUCCACCACCAACAAUAUCCA
............(((((((.(...(((((.....)))))((....))..).))))))).....(((((((...)))))))................. ( -25.70)
>DroEre_CAF1 88291 94 + 1
UAUACACACAAACAUUUGCACAGUUCAAUGCACAAUUGAUAGCAACAAAGCGCAAAUGGAAGCGUGGCUCCUAGAGCUCCA---CCAACAAUAUCCA
....(((.(...(((((((.....(((((.....)))))..((......)))))))))...).)))((((...))))....---............. ( -20.90)
>DroYak_CAF1 88255 94 + 1
UAUACACACAAGCAUUUGCACAGUUCAAUGCACAAUUGAUGGCAACAAAGCGCAAAUAGAAGCGGAGCUCCUAGAGCUCCA---CCAACAAUAUCCA
...........((((((((.(...(((((.....)))))((....))..).))))))....))(((((((...))))))).---............. ( -23.90)
>DroAna_CAF1 88954 78 + 1
UAUACACACAAACAUUUGCACAGUUCAAUGCACAAUUGAUGGCAACAAAGCGCAAAUGGAA-CGCCGCUCGUGGAGC------------------GA
............(((((((.(...(((((.....)))))((....))..).)))))))...-...(((((...))))------------------). ( -20.60)
>consensus
UAUACACACAAACAUUUGCACAGUUCAAUGCACAAUUGAUGGCAACAAAGCGCAAAUGGAAGCGGGGCUCCUAGAGCUCCA___CCAACAAUAUCCA
............(((((((.....(((((.....)))))..((......))))))))).....(((((((...)))))))................. (-20.96 = -21.68 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:54 2006