Locus 3172

Sequence ID 3R_DroMel_CAF1
Location 8,407,766 – 8,407,868
Length 102
Max. P 0.779992
window5141

overview

Window 1

Location 8,407,766 – 8,407,868
Length 102
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 78.29
Mean single sequence MFE -27.15
Consensus MFE -17.00
Energy contribution -16.80
Covariance contribution -0.20
Combinations/Pair 1.08
Mean z-score -1.82
Structure conservation index 0.63
SVM decision value 0.55
SVM RNA-class probability 0.779992
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8407766 102 - 27905053
AGGUCUAUUAGAGAAAAUAACCAAGGCAAAUACGACCGAGGCUCAAAGGAGCUGCGUGGUUUAUGUUUGGUGUCAAGGUUCCACAUUCCCCACUGG----GCACUU-
.(((.((((......)))))))....((((((.(((((.(((((....)))))...)))))..))))))(((((.((...............)).)----))))..- ( -24.76)
>DroSec_CAF1 69653 80 - 1
AGGUCUAUUAGAGGAAAUAACCAAAGCAAAUACGACCGAGGCUCAAAGGAGCUGCGUGGUUUGUGUUUGGUGUCAAGGUU---------------------------
.(((.((((......)))))))....((((((((((((.(((((....)))))...))).)))))))))...........--------------------------- ( -22.60)
>DroSim_CAF1 69229 80 - 1
AGGUCUAUUAGAGGAAAUAACCAAAGCAAAUACGACCAAGGCUCAAAGGAGCUGCGUGGUUUGUGUUUGGUGUCAAGGUU---------------------------
.(((.((((......)))))))....((((((((((((.(((((....)))))...))).)))))))))...........--------------------------- ( -23.30)
>DroEre_CAF1 71841 102 - 1
AGGUCUAUUAGGGGAAAUAACCAAGGCAAAUACGAACGAGGCUCAAAGGAGCUCCGUGGUUUAUGUUUGGUGACAGAGCUCCAGUUUCCCUAGUGG----AUAUUC-
..((((((((((((((........(((((((....(((..((((....))))..))).))))...((((....)))))))....))))))))))))----))....- ( -36.40)
>DroYak_CAF1 71652 107 - 1
AGGUCUAUUAGAGGAAAUAACCAAAGCAAAUACGACCGAGGCUCAAAGGAGCUCCGUGGUUUAUGUUUGGUGUCAAGGUUCCAGUUUCCCUAUUGGGUAAAUAUCCA
...((((.(((.((((((((((..(.((((((.(((((.(((((....)))))...)))))..)))))).).....))))...))))))))).)))).......... ( -28.70)
>consensus
AGGUCUAUUAGAGGAAAUAACCAAAGCAAAUACGACCGAGGCUCAAAGGAGCUGCGUGGUUUAUGUUUGGUGUCAAGGUUCCA__UUCCC_A_UGG______A____
.(((.((((......)))))))..(.((((((.(((((.(((((....)))))...)))))..)))))).).................................... (-17.00 = -16.80 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:51 2006