| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,403,569 – 8,403,663 |
| Length | 94 |
| Max. P | 0.520110 |
| Location | 8,403,569 – 8,403,663 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 82.13 |
| Mean single sequence MFE | -22.73 |
| Consensus MFE | -16.00 |
| Energy contribution | -16.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520110 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8403569 94 - 27905053 ----------UCGAGCU-GGGGA--ACCGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGGCAA ----------(((.(((-(....--((((...(((....)))....))))..)))).....(((.((((((((.......)))))))).)))....)))........ ( -26.00) >DroGri_CAF1 72183 92 - 1 --------------GAA-UGGAUGGCAUGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGUUAAUUUGAAUUUACCGUUCAGUGACACGAACGGACGA --------------...-...((.((......(((....))).....(....).)).))...((((((....)))))).....((((((........)))))).... ( -20.70) >DroEre_CAF1 67498 104 - 1 GCGUCGAGCGUCGAGCU-GGGGA--ACCGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGGCAA ..(((..(.(((..(((-(....--((((...(((....)))....))))..)))).....(((.((((((((.......)))))))).)))))).).....))).. ( -30.50) >DroWil_CAF1 79673 80 - 1 ---------------------------UGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGGCAA ---------------------------.....(....).(((.....(....)..((....(((.((((((((.......)))))))).)))....))....))).. ( -16.60) >DroMoj_CAF1 75469 92 - 1 --------------GCA-AGGAUGCCAUGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGUUAAUUUGAAUUUACCGUUCAGUGACACGAACAGGCAA --------------...-....((((.((...(((....)))....((((.((((((.((((((((((....))))).))))).))))..)).)).))..)))))). ( -22.80) >DroAna_CAF1 67446 98 - 1 GGA-------UGGAGGAAAGGAC--ACUGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGAGAA ...-------............(--(((....(((....))).(((((((((......(((((((.....)))))))...))))))))))))).............. ( -19.80) >consensus ______________GCA_AGGAA__ACUGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGGCAA ................................(((....)))....((((.((((((.((((((((((....))))).))))).))))..)).)).))......... (-16.00 = -16.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:50 2006