Locus 3170

Sequence ID 3R_DroMel_CAF1
Location 8,400,962 – 8,401,065
Length 103
Max. P 0.551228
window5139

overview

Window 9

Location 8,400,962 – 8,401,065
Length 103
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 95.47
Mean single sequence MFE -17.97
Consensus MFE -17.51
Energy contribution -17.73
Covariance contribution 0.23
Combinations/Pair 1.07
Mean z-score -1.42
Structure conservation index 0.97
SVM decision value 0.04
SVM RNA-class probability 0.551228
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8400962 103 + 27905053
AAAACAUUUUAAAAUUCUUUACAAAUAUCGAAACUGGCAAAGAAAAAAAUUAAAAUCACAAUAAAUUGUGGCCAUGACAGCCUUUAGCUUUUUGUGGGCGCAG
.....(((((((..((((((.((...........))..)))))).....)))))))..........((((.(((..(.(((.....)))..)..))).)))). ( -16.30)
>DroSec_CAF1 62817 103 + 1
AAAACAUUUUAAAAUUCUUUAUUAAUAACGAAAUUGGCAAAGAAAAAUAUUAAAAUCACAAAAAAUUGUGGCCAUGACAGCCUUUAGCUUUUUGUGGGCGCAA
.....(((((((..((((((.(((((......))))).)))))).....))))))).........(((((.(((..(.(((.....)))..)..))).))))) ( -18.80)
>DroSim_CAF1 61983 103 + 1
AAAACAUUUUAAAAUUCUUUAUUAAUAUCGAAAUUGGCAAAGAAAAAUAUUAAAAUCACAAAAAAUUGUGGCCAUGACAGCCUUUAGCUUUUUGUGGGCGCAA
.....(((((((..((((((.(((((......))))).)))))).....))))))).........(((((.(((..(.(((.....)))..)..))).))))) ( -18.80)
>consensus
AAAACAUUUUAAAAUUCUUUAUUAAUAUCGAAAUUGGCAAAGAAAAAUAUUAAAAUCACAAAAAAUUGUGGCCAUGACAGCCUUUAGCUUUUUGUGGGCGCAA
.....(((((((..((((((.(((((......))))).)))))).....))))))).........(((((.(((..(.(((.....)))..)..))).))))) (-17.51 = -17.73 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:49 2006