| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,223,952 – 1,224,046 |
| Length | 94 |
| Max. P | 0.527268 |
| Location | 1,223,952 – 1,224,046 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 78.94 |
| Mean single sequence MFE | -32.33 |
| Consensus MFE | -17.19 |
| Energy contribution | -17.53 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.53 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527268 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1223952 94 - 27905053 GU----UCUUGCAGUCAAUUGCAGGCUGAGCAAUCUGCGGCCGAUGUCGAGCCAGGUCAGUAUGCUUACUCCGUGGAGGAGGAGACACCUUUGCAAGA ..----((((((((((....(((.(((((((.....))(((((....)).)))...))))).)))...((((.....))))..))).....))))))) ( -34.90) >DroPse_CAF1 470 96 - 1 UC--CCAUCUACAGACAACUCCAAUCUGAACAGUCUAUUGCCGAUGCUGAACCCAAUCAGUAUGCCUAUUCCCAUGAAGAACAGACCCCUUUAGAGCA ..--....................((((((..((((...((..(((((((......)))))))))...(((....)))....))))...))))))... ( -14.00) >DroSec_CAF1 458 94 - 1 GU----GCUUGCAGUCAAUUGCAGGGUGAGCAAUCUGCGGCCGAUGCCGAGCCAGGUCAAUAUGCUUACUCCGUGGAGGAGGAGACUCCUUUGCUAGA ..----.(((((((....)))))))((((((((((((((((....))))...))))).....)))))))...(..((((((....))))))..).... ( -40.00) >DroSim_CAF1 458 94 - 1 GU----GCUUGCAGUCAAUUGCAGGCUGAGCAAUCUGCGGCCGAUGCCGAGCCAGGUCAAUAUGCUUACUCCGUGGAGGAGGAGACUCCUUUGCAAGA ..----((((((((....))))))))(((((((((((((((....))))...))))).....))))))....(..((((((....))))))..).... ( -40.30) >DroEre_CAF1 359 98 - 1 GUUUAUGCUUGCAGUCAGUUGCGGGCUGAGCAAUCUGCGGCCGAUGCCGAGCCAGGUCAAUAUACCUACUCCGUGGAAGAGGAGACUCCUCUGCAGGA (((((.((((((((....)))))))))))))..((((((((....)))(((..((((......)))).)))...(((.(((....))).)))))))). ( -37.40) >DroYak_CAF1 360 97 - 1 GU-CAUGCUUGCAGUCAAUUGCAGGCUGAGCAAUCUGCAGCUGAUGCCGAGCUAGGUCAAUAUACGUACUCUAUGGAAGAGGAGACCCCUCUGCGAGA ..-....(((((.((((.((((((..(....)..)))))).))))...(((.((.((......)).)))))......(((((.....)))))))))). ( -27.40) >consensus GU____GCUUGCAGUCAAUUGCAGGCUGAGCAAUCUGCGGCCGAUGCCGAGCCAGGUCAAUAUGCUUACUCCGUGGAAGAGGAGACUCCUUUGCAAGA .......(((((((...((((..((((((....))..((((....))))))))....)))).......((((........))))......))))))). (-17.19 = -17.53 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:18 2006