| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,392,880 – 8,392,972 |
| Length | 92 |
| Max. P | 0.535366 |
| Location | 8,392,880 – 8,392,972 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 80.77 |
| Mean single sequence MFE | -28.98 |
| Consensus MFE | -17.51 |
| Energy contribution | -17.02 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8392880 92 + 27905053 --CUUAUCAUUUCAAUGCCAGGGGUCAGGGCUUAAUGAGCGCUUGUCUAGCAUUGACAGUCCGCCUAAGUGGCUUUGAGUCCUCGACU-UAUCCU------- --.................((((((((((((((((...(.(((.(((.......)))))).)(((.....))).))))))))).))))-...)))------- ( -25.90) >DroVir_CAF1 69651 91 + 1 UCCUUAUCAUUCCAAUGCCAUGGUUCAAAGCUUAAUGAGCGCCUGUCUACCAUUGACAGCUGAGCUAAGUGGCUUUGUGUU---GCCU-U-----CGGCU-- ................(((..(((.(((((((.....(((..(((((.......)))))....)))....)))))))....---))).-.-----.))).-- ( -27.00) >DroPse_CAF1 57003 97 + 1 UCCUUAUCAUCUCAAUGCCAGGGGUCAGAGCUUAAUGAGCGCUUGUCUAGCAUUGACAGUCGACCUAAGUGCCUUUGAGUCG---GCUCUGUCCC--GGCCU ................(((.((((.((((((...........(((((.......))))).((((.((((....)))).))))---))))))))))--))).. ( -29.70) >DroSim_CAF1 54036 99 + 1 --CUUAUCAUUUCAAUGCCAGGGGUCAGGGCUUAAUGAGCGCUUGUCUACCAUUGACAGUCCGCCUAAGUGGCUUUGAGUCCUCGACU-UAUCCUUGGUCCU --..............(((((((((((((((((((...(.(((.(((.......)))))).)(((.....))).))))))))).))).-...)))))))... ( -32.40) >DroEre_CAF1 56544 99 + 1 --CUUAUCAUUUCAGUGCCAGAGGUCAGGGCUUAAUGAGCGCUUGUCUAGCAUUGACAGUCCACCUAAGUGGCUUUGAGUCCUCGACU-UAUCCUUGGUCCU --...........((..(((((((((((((((((..((((..(((((.......)))))..(((....))))))))))))))).))))-)....))))..)) ( -29.60) >DroPer_CAF1 56062 97 + 1 UCCUUAUCAUCUCAAUGCCAGGGGUCAGAGCUUAAUGAGCGCUUGUCUAGCAUUGACAGUCGACCUAAGUGCCUUUGAAUCG---GCUCUGUCCC--GGCCU ................(((.((((.((((((((((.(.(((((((((.......)))((.....))))))))).)))....)---))))))))))--))).. ( -29.30) >consensus __CUUAUCAUUUCAAUGCCAGGGGUCAGAGCUUAAUGAGCGCUUGUCUAGCAUUGACAGUCCACCUAAGUGGCUUUGAGUCC__GACU_UAUCCU__GGCCU ..........(((((.((((.((((....((((...))))(.(((((.......))))).).))))...)))).)))))....................... (-17.51 = -17.02 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:42 2006