Locus 3162

Sequence ID 3R_DroMel_CAF1
Location 8,375,379 – 8,375,473
Length 94
Max. P 0.577291
window5124

overview

Window 4

Location 8,375,379 – 8,375,473
Length 94
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 82.93
Mean single sequence MFE -17.19
Consensus MFE -9.96
Energy contribution -11.92
Covariance contribution 1.96
Combinations/Pair 1.14
Mean z-score -2.00
Structure conservation index 0.58
SVM decision value 0.09
SVM RNA-class probability 0.577291
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8375379 94 - 27905053
----CAGUAAAUUAUUUUUACUACAUU-UUCACGCCC---AUCAGUGGAAAAUGUAAAAGACAAAUAUUUUUGUUUCGGAAUUAAUAAACACUAUGCUGUCA
----(((((............((((((-(((.(((..---....))))))))))))..(((((((....)))))))..................)))))... ( -18.90)
>DroSec_CAF1 37085 99 - 1
UACCCAGUCAAUUAUUUUUAAUACGUUUUUCACGCCC---AUCAGUGGAAAAUGUAAAAGACAAAUAUUUUUGUUUCGAAAUUAAUAAACACUAUACUGCCA
......((..((((.((((..((((((((((((....---....))))))))))))..(((((((....))))))).)))).))))..))............ ( -19.60)
>DroSim_CAF1 36123 97 - 1
UAGUCAGUCAAUUAUUUUUACUACGUUUUUCACGCCC---AUCAGUGGAAAAUGUAAAAGACAAAUAUUUUUGUUUCGAAAUUAAUAAACACUAC--AGUCA
((((..((..((((.((((..((((((((((((....---....))))))))))))..(((((((....))))))).)))).))))..)))))).--..... ( -19.80)
>DroEre_CAF1 38306 99 - 1
UAGGAAGUCAAUUAUUUUUACUACAUUUUUCAAGCCAUUUUUCAGAGGAAAAUGUUAAAUACAAACAUUUUUGUUUCGAAAAUAACAAACA---UACAGUCA
..(((((...................))))).....((((((.(((.(((((((((.......))))))))).))).))))))........---........ ( -11.21)
>DroYak_CAF1 37999 98 - 1
UAGGCAGUCAAUUAUUUUUAAUACACUUUUUUAGCCC---UUCAGUGGAA-ACGUAAAGUACAAAUAUUUUUGUUUCGAAAAUAACAAACACUAUACUGUCA
..((((((...((((((((....((((..........---...))))(((-(((.((((((....))))))))))))))))))))..........)))))). ( -16.44)
>consensus
UAGGCAGUCAAUUAUUUUUACUACAUUUUUCACGCCC___AUCAGUGGAAAAUGUAAAAGACAAAUAUUUUUGUUUCGAAAUUAAUAAACACUAUACUGUCA
......((..((((.((((..((((((((((((...........))))))))))))..(((((((....))))))).)))).))))..))............ ( -9.96 = -11.92 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:35 2006