Locus 3161

Sequence ID 3R_DroMel_CAF1
Location 8,371,677 – 8,371,776
Length 99
Max. P 0.777943
window5123

overview

Window 3

Location 8,371,677 – 8,371,776
Length 99
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 95.40
Mean single sequence MFE -35.30
Consensus MFE -30.64
Energy contribution -31.28
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -1.41
Structure conservation index 0.87
SVM decision value 0.55
SVM RNA-class probability 0.777943
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8371677 99 - 27905053
GGCCACCAGCCUUUUGGCCUUUUUCGCAUUCGUGAAUGAACUGGCUGGCUAGCGCAAAGCCUCUGGGUUUUGCCAAGGCGACUAG---CACGCCACCUGAGU
(((((((((((....)))....(((((....))))).....))).))))).(.((((((((....)))))))))..((((.....---..))))........ ( -35.70)
>DroSec_CAF1 33471 99 - 1
GGCCACCAGCCUUUUGGCCUUUUUCGCAUUCGUGAAUGAACUGGCUGGCUAGCGCAAAGCCUCUGGGUUUUGCCAAGGCGACUAG---CAUGCCACCUGAGU
(((..((((((....(..(...(((((....))))).)..).))))))...((((((((((....))))))))..((....)).)---)..)))........ ( -34.20)
>DroSim_CAF1 32427 99 - 1
GGCCACCAGCCUUUUGGCCUUUUUCGCAUUCGUGAAUGAACUGGCUGGCUAGCGCAAAGCCUCUGGGUUUUGCCAAGGCGACUAG---CACGCCACCUGAGU
(((((((((((....)))....(((((....))))).....))).))))).(.((((((((....)))))))))..((((.....---..))))........ ( -35.70)
>DroEre_CAF1 34624 100 - 1
GGCCACCAGCCUUUUGGCCUUUUCCGCAUUCGUGAAUGAACUGGCUGGCUAG--AAAAGCCUCUGGGUUUUGCGAAGGCGACUAGCAGCACGCCACCUGAGU
(((...(((((....((......)).((((....))))....)))))(((((--.((((((....))))))((....))..))))).....)))........ ( -31.20)
>DroYak_CAF1 34363 97 - 1
GGCCACCAGCCUUUUGGCCUUAUUCGCAUUCGUGAAUGAACUGGCUGGCUAG--CAAAGCCUCUGGGUUUUGCGAAGGCGACUAG---CACGCCACCUGAGU
(((((((((((....))).((((((((....))))))))..))).))))).(--(((((((....))))))))...((((.....---..))))........ ( -39.70)
>consensus
GGCCACCAGCCUUUUGGCCUUUUUCGCAUUCGUGAAUGAACUGGCUGGCUAGCGCAAAGCCUCUGGGUUUUGCCAAGGCGACUAG___CACGCCACCUGAGU
(((((((((((....)))....(((((....))))).....))).)))))...((((((((....))))))))...((((..........))))........ (-30.64 = -31.28 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:34 2006