| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,361,575 – 8,361,695 |
| Length | 120 |
| Max. P | 0.522234 |
| Location | 8,361,575 – 8,361,695 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.94 |
| Mean single sequence MFE | -23.05 |
| Consensus MFE | -17.97 |
| Energy contribution | -17.67 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522234 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8361575 120 + 27905053 GAAAUCAUACCUCCAACAGCAUAAAUAUAUGCAUAAGUAUAGGCAAUGUGAAAAGAGGAUAAGUGUGGGGGAAAAAAAAAACUGAAACUUAAAACCAACUGGCUCCCGAGUUGGGGAAAG .........((((.....((((.....(((((....)))))....)))).....)))).(((((.(.((............)).).)))))...((((((.(....).))))))...... ( -23.70) >DroSec_CAF1 23710 111 + 1 GAAAUCGUACCUCCAACAGCAUAAAUAUAUGCAUAAAUAUAGGCAAUGUGAAAAGAGGAUAAGU-------AAAA--AAAUCUGAAACUUAAAACCAACUGGCUGCCGAGUUGGGGAAAG ..........(((((((.(((((....))))).........((((..............(((((-------....--.........)))))...((....)).))))..))))))).... ( -23.02) >DroSim_CAF1 20743 113 + 1 GAAAUCGUACCUCUAACAGCAUAAAUAUAUGCAUAAAUAUAGGCAAUGUGAAAAGAGGAUAAGU-------AAAAAAAAAUCUGAAACUUCAAACCAACUGGCUGCCGAGUUGGGGAAAG .........(((((....((((...(((((......)))))....))))....)))))......-------.................(((...((((((.(....).)))))).))).. ( -22.30) >DroEre_CAF1 25006 114 + 1 GAAAUCGUACCACCUACAGCAUAAAUAUAUGCAUAAAUAUAGGCAAUGUGUAAAGAGGAUGAGUGGG------AAAAAAAACUGAAACUUAAAACCAACUGGCUGCCGAGUUGGGGAAAG .........((.(((((.(((((....)))))....(((((.....)))))...........)))))------.....................((((((.(....).)))))))).... ( -23.30) >DroYak_CAF1 24438 115 + 1 GAAAUGGUACCACCUACAGCAUAAAUAUAUGCAUAAAUAUAGGCAAUGUGAAAAGAGGAUAAGUGGG--G---GAAAAAAACUGAAACUUAAAACCAACUGGCUGCCGAGUUGGGGAAAG .........((.(((((.(((((....))))).....((((.....))))............)))))--)---)....................((((((.(....).))))))...... ( -22.80) >DroAna_CAF1 24575 103 + 1 GUAAUCAUACCUCGUGGAACAUAAAUAUAUGCACAAGUGUAGGCUGUGUGUAAAGAGGAUAAGUGGG-------A---------GGACUCAAAACCAACUGGCUGCCGAGUUGG-GAAAG .........((((.....(((((..(((((......)))))...))))).....)))).....((((-------.---------...))))...((((((.(....).))))))-..... ( -23.20) >consensus GAAAUCGUACCUCCAACAGCAUAAAUAUAUGCAUAAAUAUAGGCAAUGUGAAAAGAGGAUAAGUGGG______AAAAAAAACUGAAACUUAAAACCAACUGGCUGCCGAGUUGGGGAAAG .........((((.....((((...(((((......)))))....)))).....))))....................................((((((.(....).))))))...... (-17.97 = -17.67 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:24 2006