Locus 3150

Sequence ID 3R_DroMel_CAF1
Location 8,350,188 – 8,350,291
Length 103
Max. P 0.508621
window5103

overview

Window 3

Location 8,350,188 – 8,350,291
Length 103
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 77.05
Mean single sequence MFE -25.91
Consensus MFE -9.35
Energy contribution -9.11
Covariance contribution -0.24
Combinations/Pair 1.18
Mean z-score -1.81
Structure conservation index 0.36
SVM decision value -0.05
SVM RNA-class probability 0.508621
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8350188 103 - 27905053
AUUAUAUGUGUGAACUAAUUGGACGGCCAACGCAAAGUUAUAUUUC--GAUGCAUUGUUUCUUUUUAUCCGACAGAU-------------AUGUCGAAAUGGAAAGUGACCUUGUUCA
..((((..((((......((((....))))))))....))))....--((.(((..(((.((((((((.(((((...-------------.)))))..)))))))).)))..))))). ( -21.00)
>DroSec_CAF1 12312 103 - 1
AUUAUAUGUGCGAACUAAUUGGACGACCAACGCAAAGUAAUAUUUC--GAUGUGUUGUUACUUUUUAUCCGACAGAU-------------AUGUCGGUAUGGAAAGUGACCUUGUUCA
...........((((.....((.....(((((((..(........)--..)))))))(((((((((((((((((...-------------.)))))).)))))))))))))..)))). ( -31.50)
>DroSim_CAF1 9217 105 - 1
AUUAUAUGUGCGAACUAAUUGGACGACCAACGCAAAGUUAUAUUUUUGUAUGUGUUGUUACCUUUUAUCCGACAGAU-------------AUGUCGGUAUGGAAAGUGACCUUGUUCA
...........((((.....((.....(((((((....((((....)))))))))))((((.((((((((((((...-------------.)))))).)))))).))))))..)))). ( -27.10)
>DroEre_CAF1 13619 111 - 1
AUUAUAUGUGCGAACUAAUUGGACAGCCAACGCAACGGUGUAUUUC--GAUGU---ACUUCUAUUUAUCUGACAGAUAAAUAAA--UGAUAUGUCGAAAUGGAAUGUGGCCAUGUUCA
...(((((.((.......((((....))))((((....(.((((((--(((((---((...((((((((.....))))))))..--.).)))))))))))).).)))))))))))... ( -28.70)
>DroYak_CAF1 12338 103 - 1
AUUAUAUGUGCGAACUAAUUGGACAACCAACGCAAAGU----------GA--U---GCUUCCUUUUGUCGGACAGAUAAAUAAAACUAAAAUGUCGUAAUGGAAUGUGUCCUUGUACA
......(((((((.......(((((.(((.(((((((.----------((--.---...)).))))).))((((.................))))....)))....)))))))))))) ( -21.24)
>consensus
AUUAUAUGUGCGAACUAAUUGGACGACCAACGCAAAGUUAUAUUUC__GAUGU_UUGUUUCUUUUUAUCCGACAGAU_____________AUGUCGAAAUGGAAAGUGACCUUGUUCA
........((((......((((....))))))))....................................((((.................))))(((..((.......))...))). ( -9.35 =  -9.11 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:16 2006