| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,348,736 – 8,348,826 |
| Length | 90 |
| Max. P | 0.701749 |
| Location | 8,348,736 – 8,348,826 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 82.66 |
| Mean single sequence MFE | -21.53 |
| Consensus MFE | -12.29 |
| Energy contribution | -12.52 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.701749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8348736 90 - 27905053 U-UCCCACU-------------GAUAAUC-UUGCUUUAAUCUCACUUUUAAAGCAACAACUUGUCCAUAUUCCACAUUCCACUCUGCACAAGUGUCAGCACUUGA .-.......-------------(((((..-(((((((((........)))))))))....))))).......................((((((....)))))). ( -17.70) >DroPse_CAF1 11533 94 - 1 U-UCGAA---GCUGCACACCCACAUAAUCCCCGCUUUAAUCCCGCCUUUAAGGCAACAGCUCGUCUGUAUGCC--AUUCCCCU-----CAAGUGUCAGCACUCGA .-((((.---((((.((((.............((.........))......((((((((.....)))).))))--........-----...))))))))..)))) ( -21.60) >DroSec_CAF1 10849 101 - 1 U-UCCCACUGGCUGCGU--GCAGAUAAUC-UCGCUUUAAUCUCACUUUUAGAGCAACAACUUGUCCAUAUUCCGCAUUCCACUCUGCACAAGUGUCAGCACUUGA .-.....(((((...((--(((((.....-..(((((((........))))))).......(((.........)))......)))))))....)))))....... ( -22.70) >DroSim_CAF1 7785 101 - 1 U-UCCCACUGGCUGCGU--GCAGAUAAUC-UCGCUUUAAUCUCACUUUUAAAGCAACAACUUGUCCAUAUUCCACAUUCCACUCUGCACAAGUGUCAGCACUUGA .-.....(((((...((--(((((.....-..(((((((........))))))).((.....))..................)))))))....)))))....... ( -22.30) >DroEre_CAF1 12167 102 - 1 UUUCGCACUGGCUGCGC--CGAGAUAAUC-CCGCUUUAAUCUCGCUUUUAAAGCAACAACUGGUCUAUAUUCCACAUUCCACUCUGCACAAGUAUCAGCACUUGA ....(((..(((...))--)(((......-..(((((((........)))))))......(((........))).......)))))).(((((......))))). ( -20.90) >DroYak_CAF1 10838 101 - 1 U-UCCCACUGGCUGCGC--AGAGAUAAUC-UCGCUUUAAUCUCGCUUUUAAAGCAACAACUGGUCUAUAUUCCACAUUCCACUCUGCAGAAGUGUCAGCACUUGA .-.....(((((..(((--((((......-..(((((((........)))))))......(((........))).......)))))).)....)))))....... ( -24.00) >consensus U_UCCCACUGGCUGCGC__CCAGAUAAUC_UCGCUUUAAUCUCACUUUUAAAGCAACAACUUGUCCAUAUUCCACAUUCCACUCUGCACAAGUGUCAGCACUUGA ................................(((((((........)))))))..................................((((((....)))))). (-12.29 = -12.52 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:15 2006