Locus 3147

Sequence ID 3R_DroMel_CAF1
Location 8,345,304 – 8,345,417
Length 113
Max. P 0.921818
window5098

overview

Window 8

Location 8,345,304 – 8,345,417
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 97.79
Mean single sequence MFE -22.02
Consensus MFE -21.34
Energy contribution -21.74
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.97
SVM decision value 1.14
SVM RNA-class probability 0.921818
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8345304 113 - 27905053
UCGGUUAAGAGCAUUUAUCCUUCAUUUAAAUGCAACAUGAUCUUUAAAAGGUUAAUAAAUCGAUUUCUGUGCAUGGCAACCUGAGUACCGAAACACAAUUAUUCAGCCAACCA
..((((....(((((((.........)))))))................(((((((((.....((((.((((..(....)....)))).)))).....))))).)))))))). ( -22.50)
>DroSec_CAF1 7400 113 - 1
UCGGUUAAGAGCAUUUAUCCUUCAUUUAAAUGCAACAGGAUCUUUGAAAGGUUAAUAAAUCGAUUUCUGUGCAUGGCAACCUGAGUACCGAAACACAAUUAUUCAGCCAACCA
..((((....(((((((.........)))))))................(((((((((.....((((.((((..(....)....)))).)))).....))))).)))))))). ( -22.50)
>DroSim_CAF1 4335 110 - 1
UCGGUUAAGAGCAUUUAUCCUUCAUUUAAAUGCAAC---AUCUUUAAAAGGUUAAUAAAUCGAUUUCUGUGCAUGGCAACCUGAGUACCGAAACACAAUUAUUCAGCCAACCA
..((((....(((((((.........)))))))...---..........(((((((((.....((((.((((..(....)....)))).)))).....))))).)))))))). ( -22.50)
>DroEre_CAF1 8552 113 - 1
UCGGUCAAGAGCAUUUAUCCUUCAUUUAAAUGCAACAGGAUCUUUAAAAGGUUAAUAAAUCGAUUUCUGUGCAUGGCAACCUGAGUACCGAAACACAAUUAUUCAGCCAACCA
..((((....(((((((.........))))))).....)))).......(((((((((.....((((.((((..(....)....)))).)))).....))))).))))..... ( -21.30)
>DroYak_CAF1 7245 113 - 1
UCGGUCAAGAGCAUUUAUCCUUCAUUUAAAUGCAACAGGAUCUUUAAAAGGUUAAUAAAUCGAUUUCUGUGCAUGGCAACCUGAGUACCGAAACACAAUUAUUCAGCCAACCA
..((((....(((((((.........))))))).....)))).......(((((((((.....((((.((((..(....)....)))).)))).....))))).))))..... ( -21.30)
>consensus
UCGGUUAAGAGCAUUUAUCCUUCAUUUAAAUGCAACAGGAUCUUUAAAAGGUUAAUAAAUCGAUUUCUGUGCAUGGCAACCUGAGUACCGAAACACAAUUAUUCAGCCAACCA
..((((....(((((((.........)))))))................(((((((((.....((((.((((..(....)....)))).)))).....))))).)))))))). (-21.34 = -21.74 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:11 2006